Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00665 ATGGAAAGGCTCCAAGGACCCATTAATCCTTCTTTTTATGGTGCCTGTTCTGACATGGGTTGCTCCAGACAAGAACTCTCGAGCTTGGAATTTGATGAATTTGACGAAGCGTATCTGTTTACGTCCAGTTTGGATGAGAAAATGCCGTTTCTTCACATGCTGCAATGTGTGGAGGAGCCATTCAAGGAGCCTAGCTTTCAGAACTTGCTGAAGCTGCAGCAGCACTTAAGCAATGACAAACCGTGGCAACAGGAAGTTAACTCGGCTTCGTGTAGAGTGAGTCCAGAGTGCAACCAAAATGGAGGGTTATGCAGGACCCAAATGGAAAATGCTCCTCTACCCACTAAGGAAAGAAGGAAACGGAAGAGATTGAGACCAGCTAAGAACAAGGAAGAAGTGGAGAGCCAGAGAATGACCCATATCGCCGTGGAGCGCAACCGGCGACGCCAAATGAACGACCATCTCAACGTTATCAAGTCCCTCATACCCACCTCCTACATACAAAGGGGTGATCAGGCGTCTATAATTGGGGGCGCAATAGACTTCGTGAAGGAATTGGAGCAGCTACTTGAATGCTTGGAAGCGCAGAGGAAAGAAAGAAAAGGAGAAGGAGATGAAGAAGGGTCACCCACATCCTCCTCGGCCACGGGAATGGCCTCAAATGGGAGAATAGGAGAAGGGGTTTACGCAGAGGTGAAGTCAGAGGTGGGTGAGATAGAGGTGACCATGATTCAAGCCCATGTGAACTTGAAGATAAAATGTCCCAAAAGGCAAGGCCAATTGCTGAAAGCCATTGTTGCATTGGAAGATCTTAGGCTCAGTGTTTTGCATCTCAACATTAGTACTTCACAAGCCACTGCCACCGTGCTTTACTCCTTCAATCTAAAGATAGAAGATGAATGTAAGCTGGGATCAGCGGTGCAGATTGCAGGAGCAGTTCATGAAATATTAAGTTTCATAAGCGATGGCAGTCAAGTCAATGAGGTGAAGGGAAATTTCAGGCAGTACAGTGGCAGTGGCTGA 1023 47.21 MERLQGPINPSFYGACSDMGCSRQELSSLEFDEFDEAYLFTSSLDEKMPFLHMLQCVEEPFKEPSFQNLLKLQQHLSNDKPWQQEVNSASCRVSPECNQNGGLCRTQMENAPLPTKERRKRKRLRPAKNKEEVESQRMTHIAVERNRRRQMNDHLNVIKSLIPTSYIQRGDQASIIGGAIDFVKELEQLLECLEAQRKERKGEGDEEGSPTSSSATGMASNGRIGEGVYAEVKSEVGEIEVTMIQAHVNLKIKCPKRQGQLLKAIVALEDLRLSVLHLNISTSQATATVLYSFNLKIEDECKLGSAVQIAGAVHEILSFISDGSQVNEVKGNFRQYSGSG 340
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 4574104 4576293 - Cp4.1LG08g00100.1 Cpe08g00665 473631
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00665 340 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 135 186 IPR011598 GO:0046983
Cpe08g00665 340 SMART finulus 141 192 IPR011598 GO:0046983
Cpe08g00665 340 Gene3D - 125 202 IPR036638 GO:0046983
Cpe08g00665 340 PANTHER MAX DIMERIZATION, MAD 84 321 - -
Cpe08g00665 340 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 128 199 IPR036638 GO:0046983
Cpe08g00665 340 MobiDBLite consensus disorder prediction 115 138 - -
Cpe08g00665 340 PANTHER TRANSCRIPTION FACTOR BHLH70 84 321 - -
Cpe08g00665 340 MobiDBLite consensus disorder prediction 197 221 - -
Cpe08g00665 340 Coils Coil 183 203 - -
Cpe08g00665 340 Pfam Helix-loop-helix DNA-binding domain 136 187 IPR011598 GO:0046983
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01841 Cpe-Chr3:13743147 Cpe08g00665 Cpe-Chr8:4574104 4.35E-132 dispersed
Cpe08g00665 Cpe-Chr8:4574104 Cpe11g00947 Cpe-Chr11:8017880 4.09E-53 dispersed
Cpe08g00665 Cpe-Chr8:4574104 Cpe11g00455 Cpe-Chr11:2566773 2.21E-52 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49864 PF00010 HLH 1.70E-09 No_clan Cpe TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00665 - - cmos:111464923 597.816