Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe08g00665 | ATGGAAAGGCTCCAAGGACCCATTAATCCTTCTTTTTATGGTGCCTGTTCTGACATGGGTTGCTCCAGACAAGAACTCTCGAGCTTGGAATTTGATGAATTTGACGAAGCGTATCTGTTTACGTCCAGTTTGGATGAGAAAATGCCGTTTCTTCACATGCTGCAATGTGTGGAGGAGCCATTCAAGGAGCCTAGCTTTCAGAACTTGCTGAAGCTGCAGCAGCACTTAAGCAATGACAAACCGTGGCAACAGGAAGTTAACTCGGCTTCGTGTAGAGTGAGTCCAGAGTGCAACCAAAATGGAGGGTTATGCAGGACCCAAATGGAAAATGCTCCTCTACCCACTAAGGAAAGAAGGAAACGGAAGAGATTGAGACCAGCTAAGAACAAGGAAGAAGTGGAGAGCCAGAGAATGACCCATATCGCCGTGGAGCGCAACCGGCGACGCCAAATGAACGACCATCTCAACGTTATCAAGTCCCTCATACCCACCTCCTACATACAAAGGGGTGATCAGGCGTCTATAATTGGGGGCGCAATAGACTTCGTGAAGGAATTGGAGCAGCTACTTGAATGCTTGGAAGCGCAGAGGAAAGAAAGAAAAGGAGAAGGAGATGAAGAAGGGTCACCCACATCCTCCTCGGCCACGGGAATGGCCTCAAATGGGAGAATAGGAGAAGGGGTTTACGCAGAGGTGAAGTCAGAGGTGGGTGAGATAGAGGTGACCATGATTCAAGCCCATGTGAACTTGAAGATAAAATGTCCCAAAAGGCAAGGCCAATTGCTGAAAGCCATTGTTGCATTGGAAGATCTTAGGCTCAGTGTTTTGCATCTCAACATTAGTACTTCACAAGCCACTGCCACCGTGCTTTACTCCTTCAATCTAAAGATAGAAGATGAATGTAAGCTGGGATCAGCGGTGCAGATTGCAGGAGCAGTTCATGAAATATTAAGTTTCATAAGCGATGGCAGTCAAGTCAATGAGGTGAAGGGAAATTTCAGGCAGTACAGTGGCAGTGGCTGA | 1023 | 47.21 | MERLQGPINPSFYGACSDMGCSRQELSSLEFDEFDEAYLFTSSLDEKMPFLHMLQCVEEPFKEPSFQNLLKLQQHLSNDKPWQQEVNSASCRVSPECNQNGGLCRTQMENAPLPTKERRKRKRLRPAKNKEEVESQRMTHIAVERNRRRQMNDHLNVIKSLIPTSYIQRGDQASIIGGAIDFVKELEQLLECLEAQRKERKGEGDEEGSPTSSSATGMASNGRIGEGVYAEVKSEVGEIEVTMIQAHVNLKIKCPKRQGQLLKAIVALEDLRLSVLHLNISTSQATATVLYSFNLKIEDECKLGSAVQIAGAVHEILSFISDGSQVNEVKGNFRQYSGSG | 340 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 4574104 | 4576293 | - | Cp4.1LG08g00100.1 | Cpe08g00665 | 473631 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe08g00665 | 340 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 135 | 186 | IPR011598 | GO:0046983 | |
| Cpe08g00665 | 340 | SMART | finulus | 141 | 192 | IPR011598 | GO:0046983 | |
| Cpe08g00665 | 340 | Gene3D | - | 125 | 202 | IPR036638 | GO:0046983 | |
| Cpe08g00665 | 340 | PANTHER | MAX DIMERIZATION, MAD | 84 | 321 | - | - | |
| Cpe08g00665 | 340 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 128 | 199 | IPR036638 | GO:0046983 | |
| Cpe08g00665 | 340 | MobiDBLite | consensus disorder prediction | 115 | 138 | - | - | |
| Cpe08g00665 | 340 | PANTHER | TRANSCRIPTION FACTOR BHLH70 | 84 | 321 | - | - | |
| Cpe08g00665 | 340 | MobiDBLite | consensus disorder prediction | 197 | 221 | - | - | |
| Cpe08g00665 | 340 | Coils | Coil | 183 | 203 | - | - | |
| Cpe08g00665 | 340 | Pfam | Helix-loop-helix DNA-binding domain | 136 | 187 | IPR011598 | GO:0046983 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe03g01841 | Cpe-Chr3:13743147 | Cpe08g00665 | Cpe-Chr8:4574104 | 4.35E-132 | dispersed | |
| Cpe08g00665 | Cpe-Chr8:4574104 | Cpe11g00947 | Cpe-Chr11:8017880 | 4.09E-53 | dispersed | |
| Cpe08g00665 | Cpe-Chr8:4574104 | Cpe11g00455 | Cpe-Chr11:2566773 | 2.21E-52 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 49864 | PF00010 | HLH | 1.70E-09 | No_clan | Cpe | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe08g00665 | - | - | cmos:111464923 | 597.816 |