Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00686 ATGGCTGATGCTGATCACCAATTCCCTCGCCGGAAAGACCTTGGCAAACGTACCTCCTCCGCTGCCAACACCGACACCACCTCCACCACCCCTACCGACATCGGGGCTGCCACTGCTCCCTGTGGTGCCTGCAAGTTTCTCCGTAGAAAATGCGTCAATGGCTGCATCTTTGCACCTCATTTCGCCTCCGATCAGGGCGTTGCTCGCTTTGCCGCCGTGCATAAGGTGTTTGGAGCAAGTAATGTATCGAAGCTGCTGCTTCATATTCCGCTCAGTCGCCGGAACGACGCCGTCGTTACCATTTCTTATGAAGCTCAGGCTAGACTCTCCGACCCTGTCTATGGCTGTGTCTCAACTGTACTTGCCCTTCAACAACAGGTGGCATCTCTGCAAGCGGAGCTTGCGGCGGTTCAAAGTCAATTAATAAGCAGCAGGTTGGCATTTGCAAGTGCAATTCAGAACTCGCAGCCACCGCAAGTGGGAGTGCAGCTGCAGCCCGCATACTCCAACAACTCCTCCATCTCTGTCTCAGCCTCCACCTCCGCTCATAATGCAATCAATTTGAGCAGTTTTGCTTCCAATTATGACCTTCCGGCGGAGACTGCCCCATCTCCCCATCACTTGGAGCCTCTCCATCTCCCCCGCCGATCCATTGAAGACGAGGAAGACGAGGAAAATAGCCAGCTCCCTACCATCTTCGCCGACGACCTACTCCGTCCACGATGA 726 54.68 MADADHQFPRRKDLGKRTSSAANTDTTSTTPTDIGAATAPCGACKFLRRKCVNGCIFAPHFASDQGVARFAAVHKVFGASNVSKLLLHIPLSRRNDAVVTISYEAQARLSDPVYGCVSTVLALQQQVASLQAELAAVQSQLISSRLAFASAIQNSQPPQVGVQLQPAYSNNSSISVSASTSAHNAINLSSFASNYDLPAETAPSPHHLEPLHLPRRSIEDEEDEENSQLPTIFADDLLRPR 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5231278 5232505 + Cp4.1LG08g06850.1 Cpe08g00686 473652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00686 241 ProSiteProfiles LOB domain profile. 39 141 IPR004883 -
Cpe08g00686 241 MobiDBLite consensus disorder prediction 200 241 - -
Cpe08g00686 241 Coils Coil 120 140 - -
Cpe08g00686 241 MobiDBLite consensus disorder prediction 1 32 - -
Cpe08g00686 241 PANTHER LOB DOMAIN CONTAINING PROTEIN 19 231 - -
Cpe08g00686 241 Pfam Lateral organ boundaries (LOB) domain 40 138 IPR004883 -
Cpe08g00686 241 PANTHER LOB DOMAIN-CONTAINING PROTEIN 20 19 231 - -
Cpe08g00686 241 MobiDBLite consensus disorder prediction 1 18 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g00686 Cpe-Chr8:5231278 Cpe15g00070 Cpe-Chr15:502522 1.66E-50 dispersed
Cpe08g00686 Cpe-Chr8:5231278 Cpe17g00315 Cpe-Chr17:2137602 2.34E-55 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49869 PF03195 LOB 6.50E-37 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00686 - - cmax:111471914 414.461