Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00691 ATGGCTTCCTCGTCATCTGATCCTGCCTTCAAACACGAACCCGGTGCTTCTTGCGCTGCTGCTGCTGGAGGAGGAACCCCGGAGTCTTCCGAGGTTGTAATGGCGAACGATCAGCTTTTACTTTACAGAGGATTCAAGAAAGCCAAGAAAGAACGAGGTTGCACTGCCAAAGAGCGCATCAGTAAAATGCCTCCATGTGCTGCTGGGCAAAGGAGTTCCATATACCGCGGAGTCACTAGCGTCTATGAATGGTTTGATGATATTAGACATAGATGGACTGGTCGTTATGAAGCTCATCTTTGGGATAAAAGTACCTGGAACCAGAACCAGAACAAGAAGGGAAAGCAAGGAGCATATGATGAAGAAGAGGCAGCTGCTAGGGCATACGATTTGGCAGCCTTAAAATATTGGGGTCCTGGGACTCTTATTAATTTTCCAGTGACTGATTATACTAGGGACCTTGAAGAAATGCAGACTGTTTCAAGAGAGGAATATCTTGCGTCTCTAAGAAGAAAGAGCAGTGGATTCTCCAGGGGAATATCTAAATATCGTGGTCTCTCGAGTCCGTTCGGTCGTATGCCAGGCCTGGATTGTGTCAACAGCATAATTTATGGTGCCGGGGATGATCAAGCAACAGTAAGCGAATTCATCCACAACTTCTGCATTGAAAGGAAGATCGACTTAACAAGTTACATTAAGTGGTGGGGGCCCAACAAAAATCGAACGTCTAGTGTTGGATCGAAGTTGTCAGAAGAAGACAAACATAGTAGCGTTGGAGAAGTAGACAGTGAACTCAAAGCTCTTGGACAGACCACCTGTCCCACAGAGCCATATGAGATGCCCTGTTTGGGTACATTACATGGGGTAAAGAAGGTTGCTTCGAAGGTCTCTGCTTTAAGTATTTTGTCACGGTCAGCAGCCTACAAGAGTTTGCAGCAGAAAGCTTTGAAATTAGAGGAAATTAACAATGAGAATGATGAGAACGAAAATAAAAACAGTGTCAACAAGATAGATCATGGGAAAGCTGTTGAAACACATGCAAGTCATGGAGGTGATCCCAGTGAGAAATATGGGGTTGCTTTTGGAGCAAGTGGTGGATTGCCACTTCAGAGAAATATGTTCCCCTTGACTCCATTCTTAACTGCACCTCTTCTTAGCAGTTACAACACTGTTGATCCCTTGGGAGATCCGATTCATTGGACATCGCTCGTTTCTGTTCTTCCTACTGGACTTTCTCGTACTGCCGAGGTTACAAAGACTGAAACCTCTTCAACTTACACTTTGTTTCGACCGGAGGAATAA 1302 44.93 MASSSSDPAFKHEPGASCAAAAGGGTPESSEVVMANDQLLLYRGFKKAKKERGCTAKERISKMPPCAAGQRSSIYRGVTSVYEWFDDIRHRWTGRYEAHLWDKSTWNQNQNKKGKQGAYDEEEAAARAYDLAALKYWGPGTLINFPVTDYTRDLEEMQTVSREEYLASLRRKSSGFSRGISKYRGLSSPFGRMPGLDCVNSIIYGAGDDQATVSEFIHNFCIERKIDLTSYIKWWGPNKNRTSSVGSKLSEEDKHSSVGEVDSELKALGQTTCPTEPYEMPCLGTLHGVKKVASKVSALSILSRSAAYKSLQQKALKLEEINNENDENENKNSVNKIDHGKAVETHASHGGDPSEKYGVAFGASGGLPLQRNMFPLTPFLTAPLLSSYNTVDPLGDPIHWTSLVSVLPTGLSRTAEVTKTETSSTYTLFRPEE 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5282239 5287862 + Cp4.1LG08g06890.1 Cpe08g00691 473657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00691 433 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 19 431 - -
Cpe08g00691 433 SUPERFAMILY DNA-binding domain 89 147 IPR016177 GO:0003677
Cpe08g00691 433 Pfam AP2 domain 89 138 IPR001471 GO:0003700|GO:0006355
Cpe08g00691 433 Coils Coil 308 331 - -
Cpe08g00691 433 MobiDBLite consensus disorder prediction 241 263 - -
Cpe08g00691 433 Gene3D AP2/ERF domain 74 148 IPR036955 GO:0003700|GO:0006355
Cpe08g00691 433 SMART rav1_2 74 152 IPR001471 GO:0003700|GO:0006355
Cpe08g00691 433 ProSiteProfiles AP2/ERF domain profile. 74 146 IPR001471 GO:0003700|GO:0006355
Cpe08g00691 433 MobiDBLite consensus disorder prediction 246 261 - -
Cpe08g00691 433 MobiDBLite consensus disorder prediction 1 29 - -
Cpe08g00691 433 PANTHER BNAA03G19580D PROTEIN 19 431 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g00691 Cpe-Chr8:5282239 Cpe01g01302 Cpe-Chr1:7828280 1.88E-54 dispersed
Cpe03g00474 Cpe-Chr3:2753857 Cpe08g00691 Cpe-Chr8:5282239 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49870 PF00847 AP2 6.70E-06 CL0081 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00691 K09285 - csv:101206434 697.582