Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00701 ATGAAGTGTTTCTTTAATCCAAAGGGGAAATCCAAATCCAAAAGAATATCCAAATCCGCTCCAGAGTTGAACCAAGGGGATAAATCCAACAATTCCGCCACCAAAAATGGTTTCAGACCGTCAAATTCATTACCATCGAGGAGTATTCCTGAATTATACAAAGAGAAGGAGCATAATTTGAGGGTTTTCTCCCTCCAAGAGCTTATTGATGCAACAAATGGCTTCAGCAGGATGTTGAAGATTGGAGAGGGCGGTTTTGGATCTGTGTACAGAGGAAGAGTTAAGCCCACAACTATCAACGATGAACCTGTTGTGGTCGCCATTAAAAAACTCAACCAGCATAGCTTGCAGGGTCATAAAGAATGGCTTGCAGAAGTTCAGTTTCTTAGCGTCGTTGATCATCCAAATTTAGTTAAACTTCTGGGTTATGCTGCTGAGAATGGTGAGAGAGGGATTCAGAGGCTGTTAGTCTACGAGTTCCTTCCCAACCGAAGCTTGGAGCACCATCTTTTCCAAAGAATGTCGCCCACTCTCCCATGGAAGAAAAGAGTAGAGATTAGCATTGGTGCAGCTCAGGGTTTGGCTTATCTACATGGAGGATTAGAAACACAGGTGGTTGGAACACATGGATACGCTGCTCCTGAATATGTTGAAACAGGCCGTCTCAAGAGCCAATGCGACGTATGGAGTTTCGGTGTGGTTCTATATGAACTCCTCACAGGCAGACGAGCATTGGATAGAAACCGCCCCACGGGAGAGCAGAAACTTCTTCAATGGGTGAGACAGTTTCCAGTTGACAGTAGTATGTTCACCATGCTAATCGATCCTCGACTCAGAAACCAGTATTCCTTGTCCTCCGCCCGGGAAGTTGCAAAGTTGGCAGACCGGTGCCTGAACAAGAATGCAATGAGTCGGCCAACGATGACAGAAGTAGTTGAAAGCTTACAGAAAGCGCTAGTAATGTCGGAAGAGAAAACGAGCTCAAGCTCGAGCAGTAGCCAGAAACAACAGTCTCATGGCGTTCTGTTATCTCCAAGATTTGTTGATCAAAAGCATGGCATGATTGGAAGACGACAAGGAAAGGTATGA 1089 45.18 MKCFFNPKGKSKSKRISKSAPELNQGDKSNNSATKNGFRPSNSLPSRSIPELYKEKEHNLRVFSLQELIDATNGFSRMLKIGEGGFGSVYRGRVKPTTINDEPVVVAIKKLNQHSLQGHKEWLAEVQFLSVVDHPNLVKLLGYAAENGERGIQRLLVYEFLPNRSLEHHLFQRMSPTLPWKKRVEISIGAAQGLAYLHGGLETQVVGTHGYAAPEYVETGRLKSQCDVWSFGVVLYELLTGRRALDRNRPTGEQKLLQWVRQFPVDSSMFTMLIDPRLRNQYSLSSAREVAKLADRCLNKNAMSRPTMTEVVESLQKALVMSEEKTSSSSSSSQKQQSHGVLLSPRFVDQKHGMIGRRQGKV 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5462444 5465657 + Cp4.1LG08g07000.1 Cpe08g00701 473667

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00701 362 PANTHER OS01G0588500 PROTEIN-RELATED 203 335 - -
Cpe08g00701 362 PANTHER OS01G0588500 PROTEIN-RELATED 24 206 - -
Cpe08g00701 362 Gene3D Phosphorylase Kinase; domain 1 59 160 - -
Cpe08g00701 362 MobiDBLite consensus disorder prediction 1 48 - -
Cpe08g00701 362 MobiDBLite consensus disorder prediction 18 48 - -
Cpe08g00701 362 ProSitePatterns Protein kinases ATP-binding region signature. 81 110 IPR017441 GO:0005524
Cpe08g00701 362 Gene3D Transferase(Phosphotransferase) domain 1 204 342 - -
Cpe08g00701 362 SUPERFAMILY Protein kinase-like (PK-like) 58 329 IPR011009 -
Cpe08g00701 362 ProSiteProfiles Protein kinase domain profile. 75 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe08g00701 362 Gene3D Transferase(Phosphotransferase) domain 1 162 203 - -
Cpe08g00701 362 Pfam Protein tyrosine and serine/threonine kinase 80 198 IPR001245 GO:0004672|GO:0006468
Cpe08g00701 362 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL20-RELATED 203 335 - -
Cpe08g00701 362 MobiDBLite consensus disorder prediction 322 343 - -
Cpe08g00701 362 Pfam Protein kinase domain 203 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe08g00701 362 MobiDBLite consensus disorder prediction 322 345 - -
Cpe08g00701 362 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL20-RELATED 24 206 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00701 - - K00924 csv:101208656 609.757
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe05g00210 Cpe08g00701 CCT
Cpe05g00210 Cpe08g00701 ECH
Cpe03g01628 Cpe08g00701 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g00701 Cpe-Chr8:5462444 Cpe15g00295 Cpe-Chr15:3680415 6.04E-141 dispersed
Cpe14g00905 Cpe-Chr14:7614477 Cpe08g00701 Cpe-Chr8:5462444 5.46E-45 wgd
Cpe05g00210 Cpe-Chr5:1162533 Cpe08g00701 Cpe-Chr8:5462444 1.54E-88 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g575 . . Bda06g01304 . . . . . Cmo06g00851 . Cma02g01580 . Car02g01344 . . . Cpe05g00210 Bhi11g00096 . . . . Mch10g1609 . Cla10g00201 . . . . . . Cone8ag0440 Cone12ag0425 Cone6ag0626 Cone9ag0627 Lsi07g01242 . Chy04g00037 Cme06g02513 Blo03g00818 . Bda07g00128 Bda09g00691 Bpe08g00866 Bpe11g00359 . . . Cmo02g01622 Cmo19g00393 Cma06g00828 Cma16g01095 . Car16g01036 Cpe08g00701 . Bhi05g00563 . . . . . Lcy12g1885 Cla09g01197 . . . . . . . Csa03g04665 Chy06g02104 Cme04g00046
Vvi15g274 . . . . . . . . . . Cma06g01182 Cma14g01929 Car06g01034 Car14g01729 . Cpe08g00701 Cpe03g01628 Bhi01g00155 . . . . . Lcy11g1818 Cla05g00308 . . . . . . . . . Cone18ag0986 Lsi05g01885 . . Cme06g00057 Blo02g00247 Blo16g00655 . . Bpe13g00880 . . . . Cmo06g01220 Cmo14g01983 . . . . . . . . . . . . . . . . . . . . . Csa03g01050 Chy06g00324 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001810 3 2 1 0 2 0 4 0 0 2 2 0 4 2 0 4 0 0 4 0 2 0 0 0 0 2 0 0 0 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62555 PF07714 PK_Tyr_Ser-Thr 9.40E-19 CL0016 Cpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe08g00701 Cpe_Chr08 FPKM 11.836791 11.708276 34.363785 33.803684 14.235924 15.048488 14.759085 5.123228 3.530079 4.767207