Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00714 ATGGGCAAGCAAGGGCCTTGCTATCACTGTGGAGTTACAAGCACACCACTCTGGCGCAATGGGCCTCCCGATAAGCCAGTATTGTGCAACGCATGTGGATCTCGATGGAGGACGAAGGGAAGTCTTGCAAACTATACTCCTCTTCATGCTCGGGCAGATCCTGATGAGTACGATGATAAAAGACTCTCTAGGTTGAAGAACTCGTCCGTGTATAAGAACAAAGAAGTGAAACTGCTTAAAAGAAAGCACTATCAAGATCATGGAGTTGTGGTTGGGGTTATCCCTGATCATGCTCAGAGCTTCCACAAGGCAGTGGATGAAGATACAAGTAATAGATCAAGTTCTGGATCAGCCATATCGAATTCCGAGAGCTGTGCACAATTCGGTGGCGCCGATGGAAGTGATCTGACAGGTCCCTCACAGTCGACAGCTTGGGAGTCGATGGTGCCTTCGAGAAAGAGGACCTGTGTTGATCGTCCGAAGTCTACTGCAGTCGAGAAACTCACTAAAGATCTATACACCATTTTACGTGAACAGCAGTCGTATTTCTCTGGATCTTCTGAGGAGGATTTGCTTTTCGAGAGTGAAACTCCAATGGTCTCCGTAGAGATAGGTCATGGAAGCATTCTCATGAGGCATCCAAGTTCCATTGCTCGAGAAGAGGAGTCGGAAGCAAGCTCAATTTCAGTTGATCATAAACATTTCTCTGTAAACGAGGCTTATTCAGAGTCGTCCATCGTTCCTTCTACTCTTGGAATCGGGAGAAAGCACTCTAACGGACAGGCGTTCTTGCAGGAGCAAATCAAAAAGGACAGGCCTCAGTCGGAGAAAGTGCAAGCGCTTGGGAATCATAATTCGCCTCTCTGTAATATCGATCTAACTATCATTCTAAACTTCAGAGAGTTTACGAAGCAATTGACGAGTGGAGATCAACGAGAATTAATGAAGTATTTACCTTCTGTTGATACTGAAGAGCTTCCAGACAGCTTGAATAGCATGTTTGAAAGCCCCCAATTCAAGGAGAATTTGAATTCATTTAAGCAGCTGCTCACTGAAGGAGTCTTCGATTTCTCCTTTCCGGGTGCGAAACGAGAAGACTGCAAGATGTTGAGTCGACTCGTGTTGTGGGATTTGTCTAAATCAAAATGGGTGGAACAATACGATCGACTTAAGAAATGTTCTACTAGCTTTGTGGATGACAAGAGATTGCTTGATGGTCAAAACAAAAAGTTTTCAGAAACGAGGATTACAATGACGAGTCCGAGAAGGGTGACGACGAAGACTAGTGTAGAAAGCAAGGAACTCGTTGACGACAGTTTTTGCTTTAGTCCAAGAAGTTTATTTGCTTTGCCATCTGATGGAAGTTCCTTCACATTGGAATCTCTACATTTTGATGAGGATAGTTTTGACCAGGATCTCTTGCTCGATGTGAGGTCGAACAGCTCGTTCCCACAAGCGGAACTCCTGAGTTTTGGTGGTGAACAAGCAAGCAATAGTAGTAGTTCGATAAATCTACGACTTATGCATCGTTGA 1533 44.55 MGKQGPCYHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGSLANYTPLHARADPDEYDDKRLSRLKNSSVYKNKEVKLLKRKHYQDHGVVVGVIPDHAQSFHKAVDEDTSNRSSSGSAISNSESCAQFGGADGSDLTGPSQSTAWESMVPSRKRTCVDRPKSTAVEKLTKDLYTILREQQSYFSGSSEEDLLFESETPMVSVEIGHGSILMRHPSSIAREEESEASSISVDHKHFSVNEAYSESSIVPSTLGIGRKHSNGQAFLQEQIKKDRPQSEKVQALGNHNSPLCNIDLTIILNFREFTKQLTSGDQRELMKYLPSVDTEELPDSLNSMFESPQFKENLNSFKQLLTEGVFDFSFPGAKREDCKMLSRLVLWDLSKSKWVEQYDRLKKCSTSFVDDKRLLDGQNKKFSETRITMTSPRRVTTKTSVESKELVDDSFCFSPRSLFALPSDGSSFTLESLHFDEDSFDQDLLLDVRSNSSFPQAELLSFGGEQASNSSSSINLRLMHR 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5587559 5592796 - Cp4.1LG08g07130.1 Cpe08g00714 473680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00714 510 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Cpe08g00714 510 CDD ZnF_GATA 6 51 IPR000679 GO:0006355|GO:0043565
Cpe08g00714 510 MobiDBLite consensus disorder prediction 103 158 - -
Cpe08g00714 510 Gene3D - 3 83 IPR013088 GO:0006355|GO:0008270
Cpe08g00714 510 Pfam Asx homology domain 273 363 IPR028020 -
Cpe08g00714 510 PANTHER GATA TRANSCRIPTION FACTOR 26 1 509 - -
Cpe08g00714 510 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 44 - -
Cpe08g00714 510 PANTHER OSJNBB0038F03.10 PROTEIN 1 509 IPR044589 -
Cpe08g00714 510 Gene3D - 277 360 IPR038108 -
Cpe08g00714 510 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Cpe08g00714 510 MobiDBLite consensus disorder prediction 110 149 - -
Cpe08g00714 510 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 284 393 IPR044867 -
Cpe08g00714 510 SMART GATA_3 1 55 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g00714 Cpe-Chr8:5587559 Cpe15g00304 Cpe-Chr15:3909388 0 dispersed
Cpe14g00916 Cpe-Chr14:7710007 Cpe08g00714 Cpe-Chr8:5587559 0 wgd
Cpe05g00222 Cpe-Chr5:1252047 Cpe08g00714 Cpe-Chr8:5587559 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49872 PF13919 ASXH 1.80E-07 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00714 - - csv:101205985 852.818