Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00714 ATGGGCAAGCAAGGGCCTTGCTATCACTGTGGAGTTACAAGCACACCACTCTGGCGCAATGGGCCTCCCGATAAGCCAGTATTGTGCAACGCATGTGGATCTCGATGGAGGACGAAGGGAAGTCTTGCAAACTATACTCCTCTTCATGCTCGGGCAGATCCTGATGAGTACGATGATAAAAGACTCTCTAGGTTGAAGAACTCGTCCGTGTATAAGAACAAAGAAGTGAAACTGCTTAAAAGAAAGCACTATCAAGATCATGGAGTTGTGGTTGGGGTTATCCCTGATCATGCTCAGAGCTTCCACAAGGCAGTGGATGAAGATACAAGTAATAGATCAAGTTCTGGATCAGCCATATCGAATTCCGAGAGCTGTGCACAATTCGGTGGCGCCGATGGAAGTGATCTGACAGGTCCCTCACAGTCGACAGCTTGGGAGTCGATGGTGCCTTCGAGAAAGAGGACCTGTGTTGATCGTCCGAAGTCTACTGCAGTCGAGAAACTCACTAAAGATCTATACACCATTTTACGTGAACAGCAGTCGTATTTCTCTGGATCTTCTGAGGAGGATTTGCTTTTCGAGAGTGAAACTCCAATGGTCTCCGTAGAGATAGGTCATGGAAGCATTCTCATGAGGCATCCAAGTTCCATTGCTCGAGAAGAGGAGTCGGAAGCAAGCTCAATTTCAGTTGATCATAAACATTTCTCTGTAAACGAGGCTTATTCAGAGTCGTCCATCGTTCCTTCTACTCTTGGAATCGGGAGAAAGCACTCTAACGGACAGGCGTTCTTGCAGGAGCAAATCAAAAAGGACAGGCCTCAGTCGGAGAAAGTGCAAGCGCTTGGGAATCATAATTCGCCTCTCTGTAATATCGATCTAACTATCATTCTAAACTTCAGAGAGTTTACGAAGCAATTGACGAGTGGAGATCAACGAGAATTAATGAAGTATTTACCTTCTGTTGATACTGAAGAGCTTCCAGACAGCTTGAATAGCATGTTTGAAAGCCCCCAATTCAAGGAGAATTTGAATTCATTTAAGCAGCTGCTCACTGAAGGAGTCTTCGATTTCTCCTTTCCGGGTGCGAAACGAGAAGACTGCAAGATGTTGAGTCGACTCGTGTTGTGGGATTTGTCTAAATCAAAATGGGTGGAACAATACGATCGACTTAAGAAATGTTCTACTAGCTTTGTGGATGACAAGAGATTGCTTGATGGTCAAAACAAAAAGTTTTCAGAAACGAGGATTACAATGACGAGTCCGAGAAGGGTGACGACGAAGACTAGTGTAGAAAGCAAGGAACTCGTTGACGACAGTTTTTGCTTTAGTCCAAGAAGTTTATTTGCTTTGCCATCTGATGGAAGTTCCTTCACATTGGAATCTCTACATTTTGATGAGGATAGTTTTGACCAGGATCTCTTGCTCGATGTGAGGTCGAACAGCTCGTTCCCACAAGCGGAACTCCTGAGTTTTGGTGGTGAACAAGCAAGCAATAGTAGTAGTTCGATAAATCTACGACTTATGCATCGTTGA 1533 44.55 MGKQGPCYHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGSLANYTPLHARADPDEYDDKRLSRLKNSSVYKNKEVKLLKRKHYQDHGVVVGVIPDHAQSFHKAVDEDTSNRSSSGSAISNSESCAQFGGADGSDLTGPSQSTAWESMVPSRKRTCVDRPKSTAVEKLTKDLYTILREQQSYFSGSSEEDLLFESETPMVSVEIGHGSILMRHPSSIAREEESEASSISVDHKHFSVNEAYSESSIVPSTLGIGRKHSNGQAFLQEQIKKDRPQSEKVQALGNHNSPLCNIDLTIILNFREFTKQLTSGDQRELMKYLPSVDTEELPDSLNSMFESPQFKENLNSFKQLLTEGVFDFSFPGAKREDCKMLSRLVLWDLSKSKWVEQYDRLKKCSTSFVDDKRLLDGQNKKFSETRITMTSPRRVTTKTSVESKELVDDSFCFSPRSLFALPSDGSSFTLESLHFDEDSFDQDLLLDVRSNSSFPQAELLSFGGEQASNSSSSINLRLMHR 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5587559 5592796 - Cp4.1LG08g07130.1 Cpe08g00714 473680

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00714 510 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Cpe08g00714 510 CDD ZnF_GATA 6 51 IPR000679 GO:0006355|GO:0043565
Cpe08g00714 510 MobiDBLite consensus disorder prediction 103 158 - -
Cpe08g00714 510 Gene3D - 3 83 IPR013088 GO:0006355|GO:0008270
Cpe08g00714 510 Pfam Asx homology domain 273 363 IPR028020 -
Cpe08g00714 510 PANTHER GATA TRANSCRIPTION FACTOR 26 1 509 - -
Cpe08g00714 510 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 44 - -
Cpe08g00714 510 PANTHER OSJNBB0038F03.10 PROTEIN 1 509 IPR044589 -
Cpe08g00714 510 Gene3D - 277 360 IPR038108 -
Cpe08g00714 510 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Cpe08g00714 510 MobiDBLite consensus disorder prediction 110 149 - -
Cpe08g00714 510 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 284 393 IPR044867 -
Cpe08g00714 510 SMART GATA_3 1 55 IPR000679 GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00714 - - - csv:101205985 852.818
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g00714 Cpe-Chr8:5587559 Cpe15g00304 Cpe-Chr15:3909388 0 dispersed
Cpe14g00916 Cpe-Chr14:7710007 Cpe08g00714 Cpe-Chr8:5587559 0 wgd
Cpe05g00222 Cpe-Chr5:1252047 Cpe08g00714 Cpe-Chr8:5587559 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe11g00511 CCT,ECH 66 328 C2C2-Gata Transcription Factor Family AT5G25830 51.9 1.7e-60 230.3
Cpe06g00489 CCT,CST,ECH 59 320 C2C2-Gata Transcription Factor Family AT5G25830 51.4 1.0e-57 221.1
Cpe14g00550 . 28 305 C2C2-Gata Transcription Factor Family AT5G66320 50.7 8.5e-63 238.0
Cpe10g00648 . 108 291 C2C2-Gata Transcription Factor Family AT5G66320 50.9 2.7e-45 179.9
Cpe06g00489 CCT,CST,ECH 48 317 C2C2-Gata Transcription Factor Family AT4G32890 50.4 1.1e-53 207.6
Cpe07g00206 CCT,CST,ECH 49 247 C2C2-Gata Transcription Factor Family AT4G32890 50.5 8.3e-41 164.9
Cpe05g00222 . 1 511 C2C2-Gata Transcription Factor Family AT4G17570 52.5 5.3e-133 471.9
Cpe08g00714 . 1 489 C2C2-Gata Transcription Factor Family AT4G17570 53.6 2.6e-132 469.5
Cpe15g00304 . 1 492 C2C2-Gata Transcription Factor Family AT4G17570 50.7 3.7e-126 449.1
Cpe08g00714 . 1 490 C2C2-Gata Transcription Factor Family AT5G47140 50.4 5.6e-113 405.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001256 2 2 1 2 3 2 5 2 2 2 2 2 4 2 1 4 2 3 4 2 2 2 2 2 2 2 2 7 3 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49872 PF13919 ASXH 1.80E-07 No_clan Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe08g00714 Cpe_Chr08 FPKM 21.735367 17.943621 42.280567 43.145523 45.878471 51.63084 39.101147 36.505688 36.638924 37.749424