Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00728 ATGATGTCTTCCAAACACGACAACCTTAGTTTGAGCCTTGGATTGAGCTTTGATTCTCATTATTTGCAGCTCAATCTCCGGCCTTCTTGGAATGATCATGCCTCATCAGATCGGACATCGGAAAACCGGATGCCGCCATCGCCGGTGGATTGCGAGGAGGAGGAGGAGGAGGAAGAGGCGGCGGTGTCGAGTCCTAACAGTACGGTTTCGACTGTAAGTGGGAAGAGGAGTGAACCAGAGACCAACAACGGCGAGGATCTTGACGGCGATGAAGAAGACGCTGAAACTTCTAGAAAAAAGCTTCGTCTCACTAAAGATCAGTCCGCCGTCTTGGAAGACAGCTTCAAAGAACACAACACTCTCAATCCGAAGCAAAAGTTAGCCTTGGCTAAACAATTGGGTCTCCGGCCAAGACAAGTCGAAGTCTGGTTCCAAAACAGAAGGGCAAGGACAAAGTTGAAGCAAACGGAAGTTGACTGTGAGTTTCTAAAGAGATGCTGCGAGAATCTAACGGAGGAGAACAGGCGGTTGCAAAAAGAAGTTCAAGAACTGAGAGCACTGAAACTTTCCCCTCAGTTCTACATGCACATGGCCCCACCCACCACCCTCACCATGTGCCCATCATGTGAGCGCGTGGCGGTCCCATCCTCCACGTCGGCTCCACTTAACGTAACGAGAATGGGCCCGGCTCAAGCCCAAGCCCAAGCCCAATCCAAGGCCCTTCACTCTCGGCCTATCCATGTCAACCCGTGGGCCTCCGCCATCCCGGCCCGGCCCTTTAACGCTCTCCACCCTCGCTCGTAA 804 52.61 MMSSKHDNLSLSLGLSFDSHYLQLNLRPSWNDHASSDRTSENRMPPSPVDCEEEEEEEEAAVSSPNSTVSTVSGKRSEPETNNGEDLDGDEEDAETSRKKLRLTKDQSAVLEDSFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQFYMHMAPPTTLTMCPSCERVAVPSSTSAPLNVTRMGPAQAQAQAQSKALHSRPIHVNPWASAIPARPFNALHPRS 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5725956 5727543 - Cp4.1LG08g07290.1 Cpe08g00728 473694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00728 267 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT3 33 256 - -
Cpe08g00728 267 Pfam HD-ZIP protein N terminus 42 80 IPR006712 GO:0005634
Cpe08g00728 267 Coils Coil 153 190 - -
Cpe08g00728 267 CDD homeodomain 98 155 IPR001356 GO:0003677
Cpe08g00728 267 CDD bZIP 147 186 - -
Cpe08g00728 267 Gene3D - 89 159 - -
Cpe08g00728 267 SUPERFAMILY Homeodomain-like 92 155 IPR009057 -
Cpe08g00728 267 MobiDBLite consensus disorder prediction 62 78 - -
Cpe08g00728 267 MobiDBLite consensus disorder prediction 29 101 - -
Cpe08g00728 267 ProSitePatterns 'Homeobox' domain signature. 129 152 IPR017970 GO:0000981|GO:0006355
Cpe08g00728 267 Pfam Homeobox associated leucine zipper 154 188 IPR003106 GO:0006355|GO:0043565
Cpe08g00728 267 Pfam Homeodomain 98 152 IPR001356 GO:0003677
Cpe08g00728 267 PANTHER - 33 256 - -
Cpe08g00728 267 ProSiteProfiles 'Homeobox' domain profile. 94 154 IPR001356 GO:0003677
Cpe08g00728 267 PRINTS Lambda-repressor HTH signature 125 134 IPR000047 GO:0003677
Cpe08g00728 267 PRINTS Lambda-repressor HTH signature 134 150 IPR000047 GO:0003677
Cpe08g00728 267 SMART halz 154 197 IPR003106 GO:0006355|GO:0043565
Cpe08g00728 267 SMART HOX_1 96 158 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g00728 Cpe-Chr8:5725956 Cpe17g00660 Cpe-Chr17:5354676 4.34E-68 dispersed
Cpe14g00930 Cpe-Chr14:7818059 Cpe08g00728 Cpe-Chr8:5725956 1.55E-150 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49873 PF00046 Homeodomain 7.50E-17 CL0123 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00728 K09338 - csv:101223208 369.777