Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00743 CTGTCTGCTTCCTCCGCCGCTAAGCTCTTCAGTCCTGTTCGTTCCGCCTCTGTCCTTCCTTCTGTCGGTCGTTTTTTCAACACTAATGCTCAGATTGCTAATGTGTTCGATCATTTTTCGCCGAACCGGAGCCTGAGTCAGGTCATGAATCTGATGGACCAGTTCATGGAGGATCCAATTCTGGCAGCTTCACGAGGAGTTGGAGCAGGATCAAGGAGGGGCTGGGACGTAAGAGAAGACGACGACGCTCTGTACTTGCGAATGGACATGCCTGGACTGAGCAAAGAAGATGTGAAGGTGAGCGTAGAGCAGAACACTCTGATAATCAAAGGCGAAGCTGCAAAGGAATCCGAAGACGAGGCAGACCGGCGACGATTCTCAAGCCGACTGGATTTGCCCGACAACCTCTACCAGCTGGATTCGATCAAAGCAGAAATGAAAAATGGTGTTCTGAAATTGAGCGTGCCGAAGGTGAAGGAAGAAGAGAGGAAGGCTGTGAAGCATGTTACAGTTGAGTAG 519 50.48 LSASSAAKLFSPVRSASVLPSVGRFFNTNAQIANVFDHFSPNRSLSQVMNLMDQFMEDPILAASRGVGAGSRRGWDVREDDDALYLRMDMPGLSKEDVKVSVEQNTLIIKGEAAKESEDEADRRRFSSRLDLPDNLYQLDSIKAEMKNGVLKLSVPKVKEEERKAVKHVTVE 172
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5890447 5895054 + Cp4.1LG08g07390.1 Cpe08g00743 473709

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00743 172 CDD ACD_sHsps-like 76 157 - -
Cpe08g00743 172 PANTHER 23.5 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 7 172 - -
Cpe08g00743 172 PANTHER 23.5 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 7 172 IPR044656 -
Cpe08g00743 172 Pfam Hsp20/alpha crystallin family 76 171 IPR002068 -
Cpe08g00743 172 Gene3D - 29 171 IPR008978 -
Cpe08g00743 172 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 66 172 IPR002068 -
Cpe08g00743 172 SUPERFAMILY HSP20-like chaperones 41 166 IPR008978 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00743 K13993 HSP20; HSP20 family protein - csv:101219106 267.7
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g00743 Cpe-Chr8:5890447 Cpe13g00336 Cpe-Chr13:3006097 4.12E-24 dispersed
Cpe01g01592 Cpe-Chr1:9725027 Cpe08g00743 Cpe-Chr8:5890447 2.23E-24 transposed
Cpe14g00946 Cpe-Chr14:7978792 Cpe08g00743 Cpe-Chr8:5890447 2.65E-10 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g533 . . . Bda08g00575 . . . . Cmo06g00800 Cmo16g01193 . . . . Sed04g1717 . . Bhi11g00196 Tan01g2027 Cmetu06g0652 . . . . . . . . . . . . . . . Lsi07g01303 . . Cme06g02574 . . . . . . . . . . . Cma06g00780 . Car06g00694 . Cpe08g00743 . . . . . . . . . . . . . . . . Csa03g00277 Chy06g02045 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002899 1 4 2 2 1 2 3 2 2 2 2 2 2 2 2 1 2 2 2 2 2 1 1 1 1 1 1 2 1 3 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe08g00743 Cpe_Chr08 FPKM 3.223986 1.762015 0.308495 0.0 0.0 0.0 0.0 0.0 0.0 0.0