Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00747 ATGGGACCCCACCCTCCTTACCCGCCCTACCACCGCCCTTCCCACCCTAAAATTCCACATCCAAAACCCCACCATCCACCCCACCATGGTGGAGGGTTGGTGCATATTGGGTTAGGGAATCCAGTGGAGAATGCATGCTGTCCAGTGCTTGGAGGGCTGTTGGAGCTTGAAGCAGCCATATGTCTATGCACAACTTTAAGGATTAAGCTTTTGAATCTCAATATATTCATTCCTTTGGCCCTTCAAGCGCTCATCACTTGTGGCAAGAACCCTCCGCCAGGCTTTAAAGGAAAGCTTTGA 300 50.67 MGPHPPYPPYHRPSHPKIPHPKPHHPPHHGGGLVHIGLGNPVENACCPVLGGLLELEAAICLCTTLRIKLLNLNIFIPLALQALITCGKNPPPGFKGKL 99
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5973778 5975006 + Cp4.1LG08g07460.1 Cpe08g00747 473713

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00747 99 CDD HPS_like 32 96 IPR027923 -
Cpe08g00747 99 PANTHER - 31 95 - -
Cpe08g00747 99 MobiDBLite consensus disorder prediction 15 29 - -
Cpe08g00747 99 MobiDBLite consensus disorder prediction 1 32 - -
Cpe08g00747 99 Gene3D - 29 98 IPR036312 -
Cpe08g00747 99 Pfam Hydrophobic seed protein 32 96 IPR027923 -
Cpe08g00747 99 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 36 96 IPR036312 -
Cpe08g00747 99 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN 31 95 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00747 - - - cmo:103490902 138.272
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01201 Cpe-Chr4:10170286 Cpe08g00747 Cpe-Chr8:5973778 2.84E-23 dispersed
Cpe08g00747 Cpe-Chr8:5973778 Cpe17g00397 Cpe-Chr17:2930449 6.06E-10 dispersed
Cpe08g00747 Cpe-Chr8:5973778 Cpe18g00514 Cpe-Chr18:5867681 4.30E-30 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g517 . . Bda06g00034 . . Bpe07g00169 . . Cmo06g00794 . . . . . . . . . . . . . . . Cla10g00268 Cam10g0276 Cec10g0286 Cco10g0280 Clacu10g0278 Cmu10g1118 Cre10g0527 Cone2ag0209 Cone16ag0834 Cone4ag0656 Cone7ag0615 Lsi07g01313 . . Cme06g02586 . . . . . . . Bma12g00636 . . . Cma06g00772 . Car06g00689 . Cpe08g00747 . . . . . . . . . . . . . . . . Csa03g00287 Chy06g02036 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000904 5 2 1 6 4 2 3 2 2 2 3 2 4 2 2 4 2 5 3 2 3 2 3 3 3 3 3 5 2 2 87
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe08g00747 Cpe_Chr08 FPKM 2.745275 2.517789 28.925383 31.742897 16.061184 16.473047 16.950916 2.007436 1.739248 1.869807