Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00780 ATGGACATAAAACAAACCCCTCCTCCCATTTTTCATGTAAACCCTCGTCTCGTTGACATACGTGAAGTACCTTCAGAGGGCGAGGAGGAGGAGGAAGGAGAAGAACACGCTCCGCCAAAAATGGCATCGGCGTTGGCTGATGCCATTGAGAAGCGGATGAAGAAACACAACAATCGGTTATGGCCACCGCAACCTCCGACACAACAACGGAGTTTCGGACGACAAATGTCGTTGGAGACGGGTTTGAATAGGGAATCGAAAGGGAAGGGCATTGAGAGAATGGCTCTCCCAAGGAGTGGGAGAAGCTTTGGAGGGTTTGATTCTACCATTGGTGAAGGGAAGAAAGGAGATTTTAGTATCTTTAGAACAAAGTCAGGTCTGAGTAAGCAGAATTCTATAATGGCATCGAGAAAAGATGATAAAAATGAAATGGAATCTCAAAGAACTTATGAAAGATCTGAAGGAATGGATGAATGTGTGAATAAAAGTGTTCCGGTTGGAAGATATTTTGCTGCTCTTAGAGGTCCTGAGCTTGATCAAGTCAAGGACTCTGAGGACATTCTTCTCCCAAAAGATGAGAAATGGCCATTCCTTCTTCGGTTCCCGATCGGATGCTTTGGTATCTGCCTCGGCCTCAGCAGCCAGGCCGTGCTATGGCGGGCACTGGCGACCAGCCCCGCTACTGAGTTCCTTCACGTCTCCCTGTTCATCAACCTCGCCATTTGGCTCCTTGCCATGGCTGCTCTTTTCGCTGTTTCAACGACCTACATTCTCAAATGCATCTTCTACTTTGAAGCTGTTAAGAGAGAGTACTTCCACCCTGTTCGTGTAAACTTCTTCTTTGCTCCTTGGGTTGTTTGCATGTTCCTTGTCATCGGCGCCCCGCCAGGGTGGGCGTCGGAGCCGCTCCACCCGGCTCTCTGGTTTGTGTTCATGGGACCTTACTTCCTACTCGAGCTCAAGATTTACGGGCAGTGGCTGTCCGGGGGGAAGCGTCGTCTGTGTAAGGTGGCGAACCCGTCAACACACCTGTCGGTGGTCGGGAACTTCGTCGGGGCAATACTGGCAGCAAAATGTGGGTGGTTGGAGGCAGCAAAGTTCTTATGGTCAGTGGGGTTCGCACACTATCTCGTAGTGTTTGTGACATTGTATCAGAGGCTGCCGACGAGTGAGGCGCTGCCGAAGGAGCTGCACCCTGTTTACTCCATGTTCATTGCAGCGCCCTCCGCCGCCAGCATCGCTTGGCAGACCATTTATCGAGACTTTGATGGCTTGTCAAGAACTTGCTTCTTCATTGCTTTGTTTCTCTATATTTCCCTTGTTGTAAGGATCAACTTCTTCACTGGATTCAGGTTTTCAGTGGCTTGGTGGTCTTACACATTTTCAATGACAACTGCTTCAGTGGCGACCATAAAGTATGCAGAGCATGTCCCTACAGTTGTAAGTAAAGGACTGGCACTTGCCCTTTCTTTCATGTCCTCTACCATGGTGTCCCTTCTCTTTGTCTCTACTCTCCTTCATGCTTTTGTTTGGAAGACATTGTTCCCCAATGACCTGGCCATTGCTATCACAAAGAGGAGACTTATAAAGGACAGGAGACCCTTCAAAAAGGCCTATGATCTAAAGCGCTGGACAAAGCAAGCTCTTACCAAGCACAACAAGGATTTTGATGCACAGAATGAACAGCTTGAGACTCCTTATACAAATGTCTCAACCAGTCAGAAGAGTTCATAA 1734 48.39 MDIKQTPPPIFHVNPRLVDIREVPSEGEEEEEGEEHAPPKMASALADAIEKRMKKHNNRLWPPQPPTQQRSFGRQMSLETGLNRESKGKGIERMALPRSGRSFGGFDSTIGEGKKGDFSIFRTKSGLSKQNSIMASRKDDKNEMESQRTYERSEGMDECVNKSVPVGRYFAALRGPELDQVKDSEDILLPKDEKWPFLLRFPIGCFGICLGLSSQAVLWRALATSPATEFLHVSLFINLAIWLLAMAALFAVSTTYILKCIFYFEAVKREYFHPVRVNFFFAPWVVCMFLVIGAPPGWASEPLHPALWFVFMGPYFLLELKIYGQWLSGGKRRLCKVANPSTHLSVVGNFVGAILAAKCGWLEAAKFLWSVGFAHYLVVFVTLYQRLPTSEALPKELHPVYSMFIAAPSAASIAWQTIYRDFDGLSRTCFFIALFLYISLVVRINFFTGFRFSVAWWSYTFSMTTASVATIKYAEHVPTVVSKGLALALSFMSSTMVSLLFVSTLLHAFVWKTLFPNDLAIAITKRRLIKDRRPFKKAYDLKRWTKQALTKHNKDFDAQNEQLETPYTNVSTSQKSS 577
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6216872 6220243 + Cp4.1LG08g07810.1 Cpe08g00780 473746

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00780 577 MobiDBLite consensus disorder prediction 1 51 - -
Cpe08g00780 577 CDD TDT_SLAC1_like 200 504 - -
Cpe08g00780 577 Gene3D - 197 515 IPR038665 -
Cpe08g00780 577 MobiDBLite consensus disorder prediction 131 154 - -
Cpe08g00780 577 Pfam Voltage-dependent anion channel 201 505 IPR004695 GO:0016021|GO:0055085
Cpe08g00780 577 PANTHER GUARD CELL S-TYPE ANION CHANNEL SLAC1 15 550 - -
Cpe08g00780 577 PANTHER - 15 550 IPR030183 GO:0006873|GO:0008308|GO:0016021
Cpe08g00780 577 MobiDBLite consensus disorder prediction 134 154 - -
Cpe08g00780 577 MobiDBLite consensus disorder prediction 553 577 - -
Cpe08g00780 577 MobiDBLite consensus disorder prediction 560 577 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00780 - - - cmos:111454438 1114.75
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe08g00780 Cpe14g00848 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g00780 Cpe-Chr8:6216872 Cpe14g00848 Cpe-Chr14:7012586 0 dispersed
Cpe08g00780 Cpe-Chr8:6216872 Cpe05g00631 Cpe-Chr5:3852371 4.42E-172 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g448 Blo02g01074 . . . Bpe05g00612 . . . Cmo06g00762 Cmo16g01074 . . . . . Cpe14g00848 . . . . . . . . Cla10g00315 Cam10g0330 Cec10g0343 Cco10g0335 Clacu10g0326 Cmu10g1166 Cre10g0576 . . Cone6ag0727 Cone9ag0733 Lsi07g01364 . . Cme06g02649 . . . . . . Bma05g00792 . . . . Cma06g00740 Cma16g01028 . Car16g00979 Cpe08g00780 . . . . . . . . . . . . . . . . Csa03g00338 Chy06g01987 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008638 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe08g00780 Cpe_Chr08 FPKM 7.795796 7.28663 4.024253 4.785754 6.362329 7.675308 9.492691 3.111861 3.989633 4.541807