Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00784 ATGGCGTTTCTAAGGTCCGCAGCAACAACCACTAGCCTTGCCATAACAGCGTCTGCTTTATCTGCAGCTTTCATCTTCCCCAGCCCTTCTTCTTCTTCTCCTCATTTTCATCTCCTTCAATCCTTCAAACCCATTTCCCTCTCTTTACATTCGTCTCGAAATTCCTCTGGATTTTCCCGAATCTCTGCCTATTCCCCCTCTGCTGTTCCCATGGAGAAACCCACTTCGGAACCAATCTCCTCCTATCAGAGCACCGTTGATTTGCCCGAACTTTTGACAGAGTTTATGGTGGATATGAAATGTGAGGGCTGCGTTAATGCTGTCAAGAACAAGTTACAGGGCGTTGATGGTGTAAAGAGTGTTGATGTGGACTTGAGCAATCAAGTGGTTAGGATACTGGGTACAACACCTGTGAAGACAATGACTGAAGCTTTGGAGCAGACGGGTCGAAAAACCCGGTTAATTGGGCAAGGGGTTCCTGAGGATTTCTTAGTTTCTGCTGCTGTCTCCGAATTTAAAGGCCCGAATATATTTGGCGTGGTTCGATTGGCTCAAGTAAGTATGGAACTAGCCAGGGTTGAAGCCAACTTTAGTGGATTGTCACCTGGAAAACATGGTTGGTCAATCAATGAATTTGGTGATCTGACTAGAGGTGCTGCTAGCACAGGGAAAGTGTTTGATTCTGCAGATTCTGGCCCTAGTAATGAGCCATTGGGCGACCTGGGAACAATAGAGGCCAATGAAAATGGCGAAGCGTTTTTCTCTGGTGTGAAACAGAACCTGCGTGTGTGTGATCTCATCGGACGATCGATAGCGGTGTATGAGACCGAAGATAAATCAGTTCCGGGCATCGCAGTAGCAGTAGTAGCTCGAAGCGCGGGTGTCGGAGAGAACTACAAGAAGCTATGCACCTGTGATGGGACTACCATATGGGAATCAAGTGACAGGGATTTTGTCACCAGCAAAGTCTAA 972 47.12 MAFLRSAATTTSLAITASALSAAFIFPSPSSSSPHFHLLQSFKPISLSLHSSRNSSGFSRISAYSPSAVPMEKPTSEPISSYQSTVDLPELLTEFMVDMKCEGCVNAVKNKLQGVDGVKSVDVDLSNQVVRILGTTPVKTMTEALEQTGRKTRLIGQGVPEDFLVSAAVSEFKGPNIFGVVRLAQVSMELARVEANFSGLSPGKHGWSINEFGDLTRGAASTGKVFDSADSGPSNEPLGDLGTIEANENGEAFFSGVKQNLRVCDLIGRSIAVYETEDKSVPGIAVAVVARSAGVGENYKKLCTCDGTTIWESSDRDFVTSKV 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6239723 6243844 - Cp4.1LG08g07900.1 Cpe08g00784 473750

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00784 323 Gene3D - 92 154 - -
Cpe08g00784 323 SUPERFAMILY HMA, heavy metal-associated domain 92 154 IPR036163 GO:0046872
Cpe08g00784 323 CDD HMA 94 153 IPR006121 GO:0046872
Cpe08g00784 323 Pfam Heavy-metal-associated domain 95 151 IPR006121 GO:0046872
Cpe08g00784 323 Gene3D Superoxide dismutase, copper/zinc binding domain 160 291 IPR036423 GO:0006801|GO:0046872
Cpe08g00784 323 PANTHER SUPEROXIDE DISMUTASE CU-ZN -RELATED 15 323 IPR024134 -
Cpe08g00784 323 Pfam Copper/zinc superoxide dismutase (SODC) 179 279 IPR001424 GO:0006801|GO:0046872
Cpe08g00784 323 SUPERFAMILY Cu,Zn superoxide dismutase-like 156 315 IPR036423 GO:0006801|GO:0046872
Cpe08g00784 323 ProSiteProfiles Heavy-metal-associated domain profile. 99 154 IPR006121 GO:0046872
Cpe08g00784 323 PANTHER COPPER CHAPERONE FOR SUPEROXIDE DISMUTASE, CHLOROPLASTIC/CYTOSOLIC 15 323 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00784 K04569 CCS; copper chaperone for superoxide dismutase - csv:101206552 476.092
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g00784 Cpe-Chr8:6239723 Cpe03g01346 Cpe-Chr3:10916869 2.58E-07 dispersed
Cpe08g00784 Cpe-Chr8:6239723 Cpe19g00200 Cpe-Chr19:1608191 1.88E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g438 . Blo03g00183 Bda06g00061 . . Bpe07g00137 . . . . . . . . . . . Bhi11g00229 . . . . . . Cla10g00318 Cam10g0333 Cec10g0347 Cco10g0339 Clacu10g0330 Cmu10g1170 Cre10g0580 . . Cone6ag0730 Cone9ag0734 Lsi07g01367 . . Cme06g02652 . . . . . . . Bma12g00113 . . . Cma06g00735 . Car06g00654 . Cpe08g00784 . . . . . . . . . . . . . . . . Csa03g00341 Chy06g01984 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009814 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe08g00784 Cpe_Chr08 FPKM 30.612566 24.588615 34.332146 31.126625 20.369282 19.109297 15.943611 33.663795 30.787531 30.72794