Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00786 ATGAAAAACACAGAAAACCGTTGCAATTTCCCTCCACACATTTTCGCATTGCCTTATCTTTCTTTCCCTCCAAATCGAGCCACAGTCTTCCAACACTCATCAAATTCCTGTTTGTTTTCTCTTCTTCTTCTCCCTTTGGCCATGGCGACCAAATTGACGTTGTCGTTAGCGTCCTTGAGTTCGCTTACTGTTCCGATTCAGAATCAGAAACCGGCAGCTTCTCTATTTTCGTCTTCTGCAAGGTCCCAATTGATTAGGGTTTCTAGCCGGCGTGTGCTTCTTCGACGGCGGGTGCGTCTTCCACCTCCCCGGGCAACTACTGATCAACCAGGTCAGGTTGGGGAAGATGATGTTGTCGATAGTAATGTCCTTCAATATTGTAGTATAGACAAAAAGGAGAAGAAGTCCATTGGAGAACTTGAGCAAGAATTTCTCCAAGCTTTACAGGCATTCTATTATGAGGGTAAAGCAATTATGTCAAACGAGGAATTTGATAATCTCAAGGAAGAATTAATGTGGGAAGGCAGCAGTGTTGTAATGCTAAGTTCTGATGAACAAAAGTTTTTGGAGGCCTCAATGGCATATGTATCTGGAAATCCAATTTTGACGGATAAAGAATTTGACGAATTGAAGATGAGACTTAAGATGGAAGGGAGTGAAATTGTGGCTGAGGGCCCCCGTTGCAGTCTCCGAAGTCGAAAGGTTTATAGTGATCTCTCTGTGGACTACTTTAGGATGTTCCTCTTGAATGTTCCAGCCACTGTAGTTGCACTGGGACTGTTCTTCTTCCTGGATGATATCACTGGATTTGAAATTACATACTTGTTGGAGCTCCCAGAGCCATTCAGTTTCATCTTCACTTGGTTTGCTGCTGTGCCATTCCTAGTTTGGTTAGCTCTTACCCTTACAAATGCAGTTGTTAGAGACTCTTTGATCTTGAAGGGCCCTTGTCCAAACTGTGGAACTGAGAATGTCTCCTTCTTTGGCACCATATTGTCAGTTTCAAGCGGTGGCAAAACAAACAATCTCAAGTGCTCAAACTGTTCAACTGAGCTGGTGTATGACTCGAAAACCCGCCTGATCACATTACCAGAAGGAAGCAACGCATAA 1110 43.6 MKNTENRCNFPPHIFALPYLSFPPNRATVFQHSSNSCLFSLLLLPLAMATKLTLSLASLSSLTVPIQNQKPAASLFSSSARSQLIRVSSRRVLLRRRVRLPPPRATTDQPGQVGEDDVVDSNVLQYCSIDKKEKKSIGELEQEFLQALQAFYYEGKAIMSNEEFDNLKEELMWEGSSVVMLSSDEQKFLEASMAYVSGNPILTDKEFDELKMRLKMEGSEIVAEGPRCSLRSRKVYSDLSVDYFRMFLLNVPATVVALGLFFFLDDITGFEITYLLELPEPFSFIFTWFAAVPFLVWLALTLTNAVVRDSLILKGPCPNCGTENVSFFGTILSVSSGGKTNNLKCSNCSTELVYDSKTRLITLPEGSNA 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6247664 6255736 + Cp4.1LG08g07780.1 Cpe08g00786 473752

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00786 369 PANTHER PGR5-LIKE PROTEIN 1A, CHLOROPLASTIC 48 369 - -
Cpe08g00786 369 PANTHER PGR5-LIKE PROTEIN 1B, CHLOROPLASTIC 48 369 IPR039987 GO:0009535|GO:0009773|GO:0016730
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00786 - - - csv:101207034 540.806
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01226 Cpe-Chr2:11075660 Cpe08g00786 Cpe-Chr8:6247664 1.44E-08 dispersed
Cpe08g00786 Cpe-Chr8:6247664 Cpe20g00826 Cpe-Chr20:7460734 9.26E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g428 . . . Bda08g00546 . . . . Cmo06g00756 . . . . . Sed04g0725 . . Bhi11g00231 Tan01g1955 Cmetu06g0227 . . Mch10g1485 . Cla10g00320 Cam10g0335 Cec10g0349 Cco10g0341 Clacu10g0332 Cmu10g1172 Cre10g0582 Cone8ag0342 . . . Lsi07g01369 . . Cme06g02654 . . . . . . Bma05g00799 . . . . Cma06g00732 . Car06g00652 . Cpe08g00786 . . . . . . . . . . . . . . . . Csa03g00343 Chy06g01982 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009124 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe08g00786 Cpe_Chr08 FPKM 10.274648 13.339084 19.410345 20.576378 10.035522 9.098261 11.304887 27.093616 28.038557 27.926373