Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00789 ATGGCTTCCTACTTCCCTCGTCCGAGCTTTGTCGCCATCGTCGTCGTTTTCGTTTTGCCGCTTATGATGCCCGGGATCACAACTAGACCGGTGCTCGCCATCTTTCGACCGAGCCCTTGGAAGATTGCTCATGCCACCTTTTATGGCGACGAGACAGCATCTGAAACAATGGGAGGAGCTTGTGGATATGGAAACCTCTTCACGAACGGCTATGGCATCGACACGGTGGCTTTAAGCTCAACGCTTTTCAACAATGGCTACGCTTGTGGAACTTGCTTTCAAATCAAATGCATGCAATCCAAAGCTTGTTACGCTAACGTTGCGTTCACAACGGTGACGGCCACCAATCTCTGTCCCCCTAATTGGTCTAAACCATCCGACAACGGTGGCTGGTGCAACCCTCCCAGGGTTCACTTTGACATGTCGAAACCCGCTTTTATGAAGATCGCCAACTGGAAGGCCGGGATCGTCCCCGTTGCGTACCGTCGTGTTCCATGCATAAAAAAAGATGGCATTCGGTTCACACTCCAAGGAAATGGGTACTGGCTTTTGGCGTACGTGATGAATGTCGGGGGCGGAGGTGACGTGTCCGGGATGTGGGTGAAAGGAAGCAAGACAGGGTGGATTAGAATGAGCCATAATTGGGGAGCTTCATATCAAGCATTTTCCGCGTTGGTTGGACAATCCCTGTCTTTTATAGTCACCTCGTACACCACCAAAGAGACCATCACGGCTTGGAATGTTGCTCCTTCTAATTGGAAGTTTGGTGCGACCTACAAAGCTAACGTCAACTTCCGTTGA 801 50.56 MASYFPRPSFVAIVVVFVLPLMMPGITTRPVLAIFRPSPWKIAHATFYGDETASETMGGACGYGNLFTNGYGIDTVALSSTLFNNGYACGTCFQIKCMQSKACYANVAFTTVTATNLCPPNWSKPSDNGGWCNPPRVHFDMSKPAFMKIANWKAGIVPVAYRRVPCIKKDGIRFTLQGNGYWLLAYVMNVGGGGDVSGMWVKGSKTGWIRMSHNWGASYQAFSALVGQSLSFIVTSYTTKETITAWNVAPSNWKFGATYKANVNFR 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6263251 6264135 - Cp4.1LG08g07870.1 Cpe08g00789 473755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00789 266 Pfam Expansin C-terminal domain 172 250 IPR007117 -
Cpe08g00789 266 Gene3D - 26 166 IPR036908 -
Cpe08g00789 266 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 181 261 IPR007117 -
Cpe08g00789 266 PRINTS Expansin/Lol pI family signature 39 54 IPR007118 GO:0005576
Cpe08g00789 266 PRINTS Expansin/Lol pI family signature 57 75 IPR007118 GO:0005576
Cpe08g00789 266 PRINTS Expansin/Lol pI family signature 79 97 IPR007118 GO:0005576
Cpe08g00789 266 PRINTS Expansin/Lol pI family signature 154 170 IPR007118 GO:0005576
Cpe08g00789 266 PRINTS Expansin/Lol pI family signature 208 222 IPR007118 GO:0005576
Cpe08g00789 266 PRINTS Expansin/Lol pI family signature 247 261 IPR007118 GO:0005576
Cpe08g00789 266 SUPERFAMILY PHL pollen allergen 169 260 IPR036749 -
Cpe08g00789 266 SUPERFAMILY Barwin-like endoglucanases 39 189 IPR036908 -
Cpe08g00789 266 Gene3D - 171 266 IPR036749 -
Cpe08g00789 266 PANTHER EXPANSIN-A7 15 266 - -
Cpe08g00789 266 SMART dpbb_1 75 161 IPR007112 -
Cpe08g00789 266 Pfam Lytic transglycolase 75 161 IPR009009 -
Cpe08g00789 266 PRINTS Expansin signature 70 84 IPR002963 GO:0009664
Cpe08g00789 266 PRINTS Expansin signature 110 120 IPR002963 GO:0009664
Cpe08g00789 266 PRINTS Expansin signature 129 146 IPR002963 GO:0009664
Cpe08g00789 266 PRINTS Expansin signature 146 159 IPR002963 GO:0009664
Cpe08g00789 266 PRINTS Expansin signature 170 182 IPR002963 GO:0009664
Cpe08g00789 266 PRINTS Expansin signature 182 203 IPR002963 GO:0009664
Cpe08g00789 266 PRINTS Expansin signature 247 263 IPR002963 GO:0009664
Cpe08g00789 266 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 58 171 IPR007112 -
Cpe08g00789 266 PANTHER EXPANSIN-A15 15 266 IPR002963 GO:0009664
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe08g00789 Cpe13g00190 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g00789 Cpe-Chr8:6263251 Cpe05g00925 Cpe-Chr5:6080077 2.10E-94 dispersed
Cpe13g00190 Cpe-Chr13:1485047 Cpe08g00789 Cpe-Chr8:6263251 4.42E-132 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00789 - - csv:101207770 497.664