Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00792 ATGGCCAAGAATGTGGGAATTCTCGCTGTTGATATCTACTTCCCTCCTACCTGTGTTCAGCAGGAAGCTTTGGAGGCTCATGATGGAGCAAGCAAGGGGAAATACACGATTGGGCTCGGACAGGATTGCATGGCGTTCTGTTCTGAGGTTGAAGATGTAATCTCAATGAGCTTGACAGTTGTCACTTCCCTTCTTGAGAAGTATAGAATTGACCCAAAGCAAGTTGGCCGGCTGGAAAAACATGGAAATACCGATATGGAAGGTGTTGATTCAACTAATGCATGCTATGGGGGCACAGCTGCCCTTTTCAACTGTGTCAATTGGGTGGAGAGCAGCTCCTGGGATGGGCGTTATGGTCTTGTGGTGTGCACGGACAGTGCGGTTGTAGATGGTAAGCTCTCTCAAACCTGTTACCTCATGGCCCTGGATTCTTGCTACAAACAATTATGTCACAAGTATGAGAAACTGGAGGGCAAACAGTTTACAATTTCTGATGCTGACTATTTTGTATTTCATTCTCCCTATAACAAGCTTGTGCAGAAGAGCTTTGCTCGATTGCTCTTTAACGACTTCAAGAGAAATGCGAGCTCAATAGACAAAGTCGTTAAAGAAAAGTTGGCTCCGTTTTCAACCTTGTCTAACGATGAAAGTTACCAGAGTCGGGATCTTGAAAAGATAACTCAACAACTTGCAAAGCCACTTTATGATTCCAAGGTGCAACCCTCCACTTTAATACCAAAGCAAGTTGGAAACATGTATACTGCTTCTCTCTATGCAGCATTTATTTCGCTTCTTCACAATAAGCATAGCTCACTGTCAGGAAATAGGGTGATATTGTTCTCGTACGGCAGTGGGTCAACCGCAACGATGTTCTCATTGAAAATCAATGAAGGTCAACATCCCTTTAGTCTCTCCAACGTTGCAGCCGTCTTGAATGTAGATAAAAAGTTGAAATCGAGGCACGAGTTGGTACCGGAGAAATTTGTCGAAATAATGAAGCTGATGGAGCATCGGTACGGGGCCAAGGACTTTACGACAAACAAGGACTGCAGCCTCCTACCACCAGGCACCTACTATCTCACCGAAGTCGATTCATTGTACAGGAGATTCTACGCTAAGAAGGATGGCGAATGTGAGAAGCTTGACAATGGTGTGGTTGCCAATGGCCACTGA 1173 44.84 MAKNVGILAVDIYFPPTCVQQEALEAHDGASKGKYTIGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYRIDPKQVGRLEKHGNTDMEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVVDGKLSQTCYLMALDSCYKQLCHKYEKLEGKQFTISDADYFVFHSPYNKLVQKSFARLLFNDFKRNASSIDKVVKEKLAPFSTLSNDESYQSRDLEKITQQLAKPLYDSKVQPSTLIPKQVGNMYTASLYAAFISLLHNKHSSLSGNRVILFSYGSGSTATMFSLKINEGQHPFSLSNVAAVLNVDKKLKSRHELVPEKFVEIMKLMEHRYGAKDFTTNKDCSLLPPGTYYLTEVDSLYRRFYAKKDGECEKLDNGVVANGH 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6281006 6285728 - Cp4.1LG08g07890.1 Cpe08g00792 473758

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00792 390 Pfam Hydroxymethylglutaryl-coenzyme A synthase C terminal 127 374 IPR013746 GO:0004421|GO:0006084|GO:0010142
Cpe08g00792 390 SUPERFAMILY Thiolase-like 126 372 IPR016039 GO:0016746
Cpe08g00792 390 TIGRFAM HMG-CoA-S_euk: hydroxymethylglutaryl-CoA synthase 128 374 IPR010122 GO:0004421|GO:0008299
Cpe08g00792 390 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A SYNTHASE 128 374 - -
Cpe08g00792 390 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A SYNTHASE 1 128 - -
Cpe08g00792 390 Gene3D - 1 127 IPR016039 GO:0016746
Cpe08g00792 390 SUPERFAMILY Thiolase-like 4 128 IPR016039 GO:0016746
Cpe08g00792 390 CDD init_cond_enzymes 4 293 - -
Cpe08g00792 390 Pfam Hydroxymethylglutaryl-coenzyme A synthase N terminal 2 79 IPR013528 -
Cpe08g00792 390 Gene3D - 128 375 IPR016039 GO:0016746
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00792 K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10] - csv:101208259 677.552
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe08g00792 Cpe14g00839 CCT
Cpe08g00792 Cpe14g00839 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe14g00839 Cpe-Chr14:6813133 Cpe08g00792 Cpe-Chr8:6281006 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g415 Blo02g01093 Blo03g00190 Bda06g00067 Bda08g00535 Bpe05g00625 Bpe07g00131 . . Cmo06g00748 Cmo16g01064 . . . . Sed03g1298 Cpe14g00839 . Bhi11g00356 Tan01g1947 Cmetu06g1625 . Hepe06g1209 Mch10g1479 . Cla10g00329 Cam10g0341 Cec10g0356 Cco10g0348 Clacu10g0342 Cmu10g1180 Cre10g0588 . Cone12ag0331 Cone6ag0741 Cone9ag0745 Lsi07g01377 . . Cme06g02665 . . . . . . Bma05g00802 Bma12g00107 . . . Cma06g00725 Cma16g01025 Car06g00646 Car16g00976 Cpe08g00792 . . . . . . . . . . . . . . . . Csa03g00349 Chy06g01974 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0055235 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe08g00792 Cpe_Chr08 FPKM 60.829048 67.762306 62.573532 60.367409 67.523499 80.733147 65.890617 74.359924 75.011139 71.731133