Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00802 ATGAATTTCGCTGGAGGCTTTCGATCGAGCCAGAAGGCGATGAACCATATGGAAGACGAACAGGATAGCGAGCTACAAATTCCATCTGGTGTCCTTGTTGGCGTAAATTTTAGTGTCTCAACTCAGCAGGATATGGAGAATATAGCAGTGATAAACATTGAGGCAGCCTGCGAGGTATCTGATCCTAAGTTGGGACTTCCTAATCCATCTTATCAGTGCACTACATGTGGTGCGAGCGTTCTCAAATGTTGTGAAGGTCATTTTGGCGCTATCAAATTTCCGTATACTATAATCCATCCGTATTTTCTCTCGGAAGTTGCACAAGTGTTGAATAAAGTTTGTCCAGGGTGTAAATCTATCCGGCGGGAACTATGGGGCAAGGTTGAGGATCCCACGTCTGATTTTCATCGACCTAAAGGTTGCAGATATTGTTTTGGAAGTCTTAAGGATTGGTACCCGCCTATGAGGTTTAAGCTTTCAACTACTGATATGTTCAGAAAAAGTATGATTATGGTGGAAGTGAAAGAAAACATGTCGAAGAAGTACCAAAAGAGGGTGGCTAGGGGAGGATTGCCTCCTGATTATTGGAATTTTATCCCGAAAGATGAACAGCAGGAGGAAAGTTATTGTAGACCGAACAGGAAAGTCCTAACACATGCTCAGCTTAGCCCAGAGAAGTTAGAAAGTAAAGATTCGATTTACCAGCAAAAGAAAATTAAGGATACTGCTACTAGCTCAAATGGTTTGAGATGGATCAAAGATGTTGTTCTTGGAAAGCGGAGTGACCATTGTTTCCGCATGGTTGTTGTTGGTGATCCAAACATTGAATTAAGTGAAATTGGTATACCTTGTCATGTTGCAGAGCGGTTGCAAATATCCGAGCATCTGAGTTCTTGGAATATGAAGAAACTAAGCACTTCTTGTTACCTTCGTCTTGTTGAAAAGGGAGAGATTTTTGTTCGTCGTGAAGGTCGTCTGGTTCGTGTACGTCACGTTCTTGAACTTAGTATGGGGGATACTATATATAGGCCCCTAGCTGATGGGGATGTTGTATTGGTTAATCGACCCCCATCCATACATCAACACTCACTTATTGCCCTATCTGTCAGGGTTCTTCCAGTCTCCTCAGTTCTTTCCTTAAACCCACTTTGTTGTTCTCCTTTCCGTGGAGATTTCGATGGCGATTGCCTTCACGGTTATGTTCCTCAATCACTTGAGGCCCGAGTGGAGCTTAGAGAGCTGGTTGCACTAGATAGACAGCTAGTCAATGGCCAAAGTGGTAGAAATCTGCTGTCACTTAGTCATGATAGTTTAACTGCTGCTCATTTAATTATGGAAGATGGAGTTTCTTTAAATCTTTTCCAAATTCAGCAGTTGCAAATGTTTGCTTTACATCAGTTGTTGCCCCCAGCAATTGTAAAAGCTCCTTCATTTAGAAGTTGTGCGTGGACAGGAAAACAATTATTCAGCATCTTCCTACCTCCTGATTTTGATTATTCTTCTCCGTCTCATCGTGTTCACATTAAAAATGGAGAACTTCTATCTTCTGAAGGATCTTATTGGCTTCGCGACACTGGCAGAAACCCTTTTCAAGCTCTGATAGAACATTGTGAGGGAATGACCCTGAACTACTTGCACATCGCTCAAAGAGTTCTTTGTGAATGGTTATCAATGAGGGGATTGAGTGTTTCACTATCAGATTTGTATCTCTCAGTCGATTCACACTCACATAAAAACATGATGGATGATATCTTTTGTGGGTTACAAGAAGCAGAGGAAACGTGTAATTTAATACAGCTGATGGTGGATTCACATAAAGATGTCCTTACCGGAGATGATGAAGGTAATCAACACGTGCTATCTATCGAAGTGGAGCATTTAAGTTACGAGAAGCAGAAATCTGCTGCTCTAAATCAAGCTTCTGTTGATGCTTTCAAGAGAGTTTTCCGTGAGATACAAAATCTTGTGTACAAGTATTCTGGAAAAGACAATTCACTTTTAACCATGTTCAAGGCTGGAAGCAAGGGTAATTTGTTGAAATTAGTTCAGCATAGCATGTGTCTTGGCTTGCAACACTCTTTGGTTACTCTGTCCTTCGGCCTTCCACATAAACTCTCATGTTCTTCATGGAATAGTCAAAAGATGCCTCGTTATATTCAGAAGGATGGTCTTGCTGACCGTACTCAGTCTTTCATCCCATATGCTGTGGTCGAAAATTCCTTTCTCTCAGGGCTTAATCCTTTCGAGTGTTTTGCTCATTCAGTGACAAATCGAGATAGCTCTTTCAGTGACAATGCTGAAGTTCCTGGGACTTTGACACGAAAACTAACATTTTTAATGCGGGATATATATAATGCATATGATCGAACAGTGAGGAATGCATATGGAAATCAACTGGTTCAGTTTTCTTATGATACTGATAGCCCCACGAGCATCTCTAATGAATTGGATGGTGAGAATAATAATACAAATCGTGATATCGGTGGTCAGCCTGTTGGTTCATTGGCTGCTTGTGCCCTTTCAGAAGCTGCATATAGTGCTTTGGACCAACCAATTAGTCTACTTGAAACTTCTCCATTGCTAAACCTTAAGAAAGTGCTGGAGTGTGGTTCAAAGAGGAATAGTCCCAAACAAACATTTTCCTTGTTCTTATTGGAGAAACTTTCGAAACGAAGTTATGGATTCGAGTATGGAGCTTTAGGAGTTAAGAACCATTTAGAAAGAGTAATCTTTAAAGATATTGTGTCTAGTGTTATGATTATCTTCGCCCCAGAGCCCTCCCGGAAAAGGCATTTTAGTCCATGGGTTTGCCACTTTCATTCCTCTTTATCTGGTATCAACTCCGGCTCATCGATCCAGGAAATTTTGAAGAAAAGAAGATTGAAAATTAGTTCCGTCATCCATTCCCTTAATATGCGGTGCGACTCTGTGAGACAAGAAGCAAAAATAAATTTGCCCTTTTTGCACATATCTACCCAGGATTGTTCTCTAGCTGATTCATCGAGAGAAGATGGTGATACCGTGTGCTTAACTGTTACAATAGCTGAAAACACAAAAAACTCTTTCCTGCAATTAGATTTCATTCAAGATTTGCTGATTCATTTCCTTCTTGGTACAGTTATAAGAGGCTTTGCTGAGATTGACAAGGTAGATATTTCATGGAATGACCGACCAAAGGTACCAAAACCTCATTGTAAATCTCACGGGGAGCTCTACTTGCGCGTGACCATGTCGGGAGAAGGAAATTCTAGATTCTGGGCAACTCTTATGAATAATTGCCTCCCGATAATGGATTTGATCGATTGGTCTCGTAGTCATCCAGATAACATCCATAGTTTCTGCATGGCATATGGAATAGATTCTGGAAGGAATTACTTTCTCAACAGTTTGGAGTCTGCAACATTGGATATCGGTAAAACAATACGTCATGAACATTTGCTGCTCGTTGCAAATACTCTTTCGGCTACCGGAGAGTTTGTTGGCTTAAATGTTAAAGGAGTAACACGCCAAAGGGAACATGCTTTGGTCAAAACACCCTTTATGCAAGCTTGCTTCTCAAGTCCTGGTGCTTCCTTTGTTAAAGCTGCTAAGGCTGGAATTAAGGACAGTCTTTCAGGAAGTCTAGACGCCTTGGCGTGGGGGAAAATACCTTCTATGGGAACCGGGGGACAGTTCGATATCCTTTACTCTGGGAAGGGGCACGAGCTTAATAAGCCCGTCGATGTTTATAATCTACTGGGTAGCCAAGGCATTTGTGAGAAGCCGAACGTGAAGATTGAATCTCTTGATAAAAACACTATATATGAGAAATATAGTGCTGTAGTGCATAAAAATGGTGGCTCTACCATTAAAGGACTTAAAAAGCTGGATAGTGTTTCTAAATCAATTTTAAGGGAGTTCTTGACATTGAATGATATTCAGAAGCTGTCTCATACATTGAGAAGCATTTTACGCAAGTATTCTTTAAATGAAAGATTAAATGAAGTGGACAAGTCAACTTTGATGATGGCTTTATACTTTCATCCTCAAAGGGATGAAAAAATTGGCGTTGGAGCTCAGGATATAAAGGTTGGTAGCCACTCAAAATACTCAAATACTCGTTGCTTCATATTGGTACGATCAGACGGGACGACAGAAGATTTCTCTTATCACAAGTGTGTTTTAGGTGCATTGGAGATCATTGCGCCTCATCGAGTGAAGGCATATCAGTCAAAATGGATGCAAGACAAGTTCGAGTGA 4239 40.86 MNFAGGFRSSQKAMNHMEDEQDSELQIPSGVLVGVNFSVSTQQDMENIAVINIEAACEVSDPKLGLPNPSYQCTTCGASVLKCCEGHFGAIKFPYTIIHPYFLSEVAQVLNKVCPGCKSIRRELWGKVEDPTSDFHRPKGCRYCFGSLKDWYPPMRFKLSTTDMFRKSMIMVEVKENMSKKYQKRVARGGLPPDYWNFIPKDEQQEESYCRPNRKVLTHAQLSPEKLESKDSIYQQKKIKDTATSSNGLRWIKDVVLGKRSDHCFRMVVVGDPNIELSEIGIPCHVAERLQISEHLSSWNMKKLSTSCYLRLVEKGEIFVRREGRLVRVRHVLELSMGDTIYRPLADGDVVLVNRPPSIHQHSLIALSVRVLPVSSVLSLNPLCCSPFRGDFDGDCLHGYVPQSLEARVELRELVALDRQLVNGQSGRNLLSLSHDSLTAAHLIMEDGVSLNLFQIQQLQMFALHQLLPPAIVKAPSFRSCAWTGKQLFSIFLPPDFDYSSPSHRVHIKNGELLSSEGSYWLRDTGRNPFQALIEHCEGMTLNYLHIAQRVLCEWLSMRGLSVSLSDLYLSVDSHSHKNMMDDIFCGLQEAEETCNLIQLMVDSHKDVLTGDDEGNQHVLSIEVEHLSYEKQKSAALNQASVDAFKRVFREIQNLVYKYSGKDNSLLTMFKAGSKGNLLKLVQHSMCLGLQHSLVTLSFGLPHKLSCSSWNSQKMPRYIQKDGLADRTQSFIPYAVVENSFLSGLNPFECFAHSVTNRDSSFSDNAEVPGTLTRKLTFLMRDIYNAYDRTVRNAYGNQLVQFSYDTDSPTSISNELDGENNNTNRDIGGQPVGSLAACALSEAAYSALDQPISLLETSPLLNLKKVLECGSKRNSPKQTFSLFLLEKLSKRSYGFEYGALGVKNHLERVIFKDIVSSVMIIFAPEPSRKRHFSPWVCHFHSSLSGINSGSSIQEILKKRRLKISSVIHSLNMRCDSVRQEAKINLPFLHISTQDCSLADSSREDGDTVCLTVTIAENTKNSFLQLDFIQDLLIHFLLGTVIRGFAEIDKVDISWNDRPKVPKPHCKSHGELYLRVTMSGEGNSRFWATLMNNCLPIMDLIDWSRSHPDNIHSFCMAYGIDSGRNYFLNSLESATLDIGKTIRHEHLLLVANTLSATGEFVGLNVKGVTRQREHALVKTPFMQACFSSPGASFVKAAKAGIKDSLSGSLDALAWGKIPSMGTGGQFDILYSGKGHELNKPVDVYNLLGSQGICEKPNVKIESLDKNTIYEKYSAVVHKNGGSTIKGLKKLDSVSKSILREFLTLNDIQKLSHTLRSILRKYSLNERLNEVDKSTLMMALYFHPQRDEKIGVGAQDIKVGSHSKYSNTRCFILVRSDGTTEDFSYHKCVLGALEIIAPHRVKAYQSKWMQDKFE 1412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6382545 6395872 - Cp4.1LG08g07990.1 Cpe08g00802 473768

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00802 1412 Gene3D - 253 424 - -
Cpe08g00802 1412 Pfam RNA polymerase Rpb1, domain 3 421 568 IPR007066 GO:0003677|GO:0003899|GO:0006351
Cpe08g00802 1412 Gene3D RNA polymerase Rpb1, domain 3 425 573 IPR042102 -
Cpe08g00802 1412 Gene3D RNA polymerase II, clamp domain 27 125 IPR044893 -
Cpe08g00802 1412 PANTHER DNA-DIRECTED RNA POLYMERASE IV SUBUNIT 1 17 222 - -
Cpe08g00802 1412 MobiDBLite consensus disorder prediction 1 20 - -
Cpe08g00802 1412 CDD RNAP_IV_RPD1_N 40 792 IPR040403 -
Cpe08g00802 1412 Gene3D RNA polymerase ii 291 343 - -
Cpe08g00802 1412 PANTHER DNA-DIRECTED RNA POLYMERASE 17 222 IPR045867 GO:0003899|GO:0006351
Cpe08g00802 1412 PANTHER DNA-DIRECTED RNA POLYMERASE 241 1293 IPR045867 GO:0003899|GO:0006351
Cpe08g00802 1412 Pfam Protein of unknown function (DUF3223) 1315 1387 - -
Cpe08g00802 1412 SMART rpolaneu7 150 445 IPR006592 GO:0003677|GO:0003899|GO:0006351
Cpe08g00802 1412 Gene3D - 1297 1389 - -
Cpe08g00802 1412 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 26 1229 - -
Cpe08g00802 1412 Gene3D - 598 745 IPR038120 -
Cpe08g00802 1412 Pfam RNA polymerase Rpb1, domain 2 258 415 IPR000722 GO:0003677|GO:0003899|GO:0006351
Cpe08g00802 1412 Pfam RNA polymerase Rpb1, domain 4 637 693 IPR007083 GO:0003677|GO:0003899|GO:0006351
Cpe08g00802 1412 Pfam RNA polymerase Rpb1, domain 5 769 1172 IPR007081 GO:0003677|GO:0003899|GO:0006351
Cpe08g00802 1412 PANTHER DNA-DIRECTED RNA POLYMERASE IV SUBUNIT 1 241 1293 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00802 K16250 NRPD1; DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6] - csv:101214578 2060.42
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01908 Cpe-Chr1:16283048 Cpe08g00802 Cpe-Chr8:6382545 1.41E-10 dispersed
Cpe06g00179 Cpe-Chr6:968843 Cpe08g00802 Cpe-Chr8:6382545 5.84E-10 dispersed
Cpe08g00802 Cpe-Chr8:6382545 Cpe20g00775 Cpe-Chr20:6940820 5.81E-33 dispersed
Cpe08g00802 Cpe-Chr8:6382545 Cpe14g01043 Cpe-Chr14:8747902 1.98E-44 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g409 . . Bda06g00069 . . Bpe07g00129 . . Cmo06g00731 . . . . . . . . . . . . . . . Cla10g00343 Cam10g0357 Cec10g0371 Cco10g0365 Clacu10g0358 Cmu10g1195 Cre10g0608 . . Cone6ag0744 Cone9ag0748 Lsi07g01394 . . Cme06g02680 . . . . . . . Bma12g00105 . . . . . Car06g00635 . Cpe08g00802 . . . . . . . . . . . . . . . . Csa03g00363 Chy06g01960 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005483 2 9 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe08g00802 Cpe_Chr08 FPKM 1.95308 2.245316 3.508423 3.699689 2.934802 3.690319 3.623622 2.878423 2.288276 2.006899