Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00807 ATGGCGATGCCTTCTCGGGAAGCAATTGATACTTTCATCGGCGTCACGGGAGCCTCCGAAGCGATCGCCGTTCAAAAGCTCGAGGCACATGGTGATGATCTCAATGCTGCTGTGAATGCATATTTCAATGAAGGAGATAGAAGTTCGTCCGTAAACGCACATCCGACCTCTGTTTCTGGTGATTATGATTTCATGGACATTGATGATCCAGTTGAAGTTGAACCCCAGGGTCCTCCTCAGTCTCTTCTATCTGCTGCTAGAGAGATTATGAATCCATTTTCATTACTTGATCAAAATCTCCGCCAGGGTTTATTTGACCACGCCTCTGATTTTACTAGTTCTGCTCCAATGGTGACTCATCCAAGAGAGGTGAGGGAGATTCCCATAGAATTTAGAGATGGTAGCCGACCATCTGGCCAATCTGGCCATGTGCTGACAATTGAGGATGTCACTGGGACTGTGGATGCCCATGGTCAAGAGGTTCGTGGGACTGTAGTAATTGATGATAACGAAGATGAAGAACCTCCAGTTGCTTCTGTAGCACATGCACCAGATTTAGAGCATCAGGCTATTTCAAGTCATGATTCTCGTGACAGAAATGCTATATCCGGTGCCTTTGAAAGTGCTGAGTTTCAAGACAGAAATGACATTGAAGAAGAAATGATTCGTGCTGCAATTGAGGCTTCAAAGAAAGATGTTGTGCAGGCTTATCCAAGTGATCCCTTAACTACACAAACTGATTTAAGCAATCTTAGGACTCGAGAACATCTTTCTCACTTGAGTGATTTAGAATTATCACCTGCAGCTTCATCTATCAAGCCAGAGGAAGATTTCCCTGAGCGAGGGGAGAACATTGGAGGATCAAAAACAGAAACTTCTAAGTTAACTGATGTGGAACTGAGGAAGGTCACATCATTAAATGGAAGGATGGAAACAGGAAGTACGTCTGCTCAAGATGAGGTTGAAGATCTAGAGGAAGTTAATTTAATCAGGCATCGGTCCAAACGCAAGTCCTCTGGCAATGCTGAGCCTGCAAAGGGGGTTGAAATTGTTGATTTAAGCCTTGCATCTAGTCCCAAGCATCCTGATAGTAGTAATAATCCACAGCACAATGGGAATGCATTTCAGTCTGATGAGTGGGGTGGAATTTCTTCAGAGGAGCATGATGAAGCAGTCATGCTTGAGGCTGCCATGTTTGGTGGAGGTTCTGAAGGAAGTTCATATCGTTTTCCATCTGCACCTCATGAATTCATGAGAAATCAAGGTTCATATGTACAGCCAGCCCCTCGCCCTCCTTCACCCTCCTTAGTAGCTCAGCGCTTGATAAGGGAACAGCAGGATGATGAGTATCTGGCAGCTTTAGAAGCTGACAGAGAAAAAGAACTGAAGGCCATGGCTGAAGCTGCAGCTGTTCGTGAAAAAGAAAGGCAGAGAGAGGAAGAATCTCGTCAGAAACTGGATGCTGAGAAGGAACTTGAAAGACATTTGGCAGAAATAGAGGCTTCTCTTCCCAGTGAACCAAGATCAGATGACGAGAATGCGGTGACACTGTTAGTGCGCATGCCAGATGGCAGTCGTCGCGGTCGTCGGTTTCTCAAATCTGATAAGCTACAGTGTCTCTTTGACTTCATTGATATCGGTAGAGTTGTCAAGCCTGGTTCCTACAGATTGGTGAGGCCATATCCTCGAAAAGCTTTTGGAGACGGGGAGAGTTCCTTAACGTTGAATGAACTTGGAGTTAACAGCAAGCAAGAAGCTTTTTTTCTGGAGTTGATTTAA 1779 44.97 MAMPSREAIDTFIGVTGASEAIAVQKLEAHGDDLNAAVNAYFNEGDRSSSVNAHPTSVSGDYDFMDIDDPVEVEPQGPPQSLLSAAREIMNPFSLLDQNLRQGLFDHASDFTSSAPMVTHPREVREIPIEFRDGSRPSGQSGHVLTIEDVTGTVDAHGQEVRGTVVIDDNEDEEPPVASVAHAPDLEHQAISSHDSRDRNAISGAFESAEFQDRNDIEEEMIRAAIEASKKDVVQAYPSDPLTTQTDLSNLRTREHLSHLSDLELSPAASSIKPEEDFPERGENIGGSKTETSKLTDVELRKVTSLNGRMETGSTSAQDEVEDLEEVNLIRHRSKRKSSGNAEPAKGVEIVDLSLASSPKHPDSSNNPQHNGNAFQSDEWGGISSEEHDEAVMLEAAMFGGGSEGSSYRFPSAPHEFMRNQGSYVQPAPRPPSPSLVAQRLIREQQDDEYLAALEADREKELKAMAEAAAVREKERQREEESRQKLDAEKELERHLAEIEASLPSEPRSDDENAVTLLVRMPDGSRRGRRFLKSDKLQCLFDFIDIGRVVKPGSYRLVRPYPRKAFGDGESSLTLNELGVNSKQEAFFLELI 592
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6430393 6435594 - Cp4.1LG08g08120.1 Cpe08g00807 473773

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00807 592 MobiDBLite consensus disorder prediction 332 389 - -
Cpe08g00807 592 MobiDBLite consensus disorder prediction 471 490 - -
Cpe08g00807 592 PANTHER OS09G0525600 PROTEIN 1 592 - -
Cpe08g00807 592 Coils Coil 471 498 - -
Cpe08g00807 592 Pfam UBA-like domain 6 47 - -
Cpe08g00807 592 Pfam UBX domain 510 590 IPR001012 GO:0005515
Cpe08g00807 592 Gene3D - 5 45 - -
Cpe08g00807 592 PANTHER FAS-ASSOCIATED PROTEIN 1 592 - -
Cpe08g00807 592 Gene3D - 511 591 - -
Cpe08g00807 592 SMART ubx_3 507 591 IPR001012 GO:0005515
Cpe08g00807 592 ProSiteProfiles UBX domain profile. 510 588 IPR001012 GO:0005515
Cpe08g00807 592 SUPERFAMILY UBA-like 5 44 IPR009060 GO:0005515
Cpe08g00807 592 MobiDBLite consensus disorder prediction 263 294 - -
Cpe08g00807 592 MobiDBLite consensus disorder prediction 358 380 - -
Cpe08g00807 592 CDD UBA_Ubx1_like 6 42 - -
Cpe08g00807 592 CDD UBX 516 590 - -
Cpe08g00807 592 SUPERFAMILY Ubiquitin-like 473 582 IPR029071 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00807 - - - cmos:111449021 1100.5
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g00513 Cpe-Chr8:3314957 Cpe08g00807 Cpe-Chr8:6430393 2.68E-49 dispersed
Cpe08g00807 Cpe-Chr8:6430393 Cpe20g00253 Cpe-Chr20:1429622 1.47E-10 dispersed
Cpe14g00824 Cpe-Chr14:6672474 Cpe08g00807 Cpe-Chr8:6430393 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g369 . . . . . . . . Cmo06g00724 Cmo16g01046 . . . . . . . . . . . . . . Cla10g00353 . . . . . . . . . . . . . . . . . . . . . . . . . . Cma16g01003 Car06g00629 . Cpe08g00807 . . . . . . . . . . . . . . . . . Chy06g01938 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004108 2 1 2 2 2 1 2 1 1 1 3 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 3 2 2 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe08g00807 Cpe_Chr08 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0