Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00812 ATGGGGAGGACTGATGATAACGTTGCTATAATTGGGGATTGGGTACCTCCAAGTCCCAGTACACGAGCCTTCTTCTCAGCAATGCTAGGGGAGGATGTTGGTTCTAGACCTGCAATGGATACTATCACCATTGATAAAACTGAAGAGCTATTTCAAAGGCCTCGAGAACATCCGGTATCGAACAACACCGTTGCAAGAGGCGGGATCCCGAGTGCCAATTCTGGTGATCGGTCGATGGATTTAAGTTCGTTTTCGGGGCAGAAATTCCGTGGGGGTCTTGTGGAAAGGATTGCAGCCAGAGCTGGATTTAATGCTCCAAGATTGAATACGGAGAGTATTAGATCCACTGATCAATCTCTGGATTCAGATGCCAAGTCTCCTTACTTGACAATACCGCCTGGTCTCAGTCCTACTACATTGCTAGATTCACCTGTTTTTCTTTCTAATTCACTGGCTCAGCAATCTCCCACAACTGGAAAGTTCCCGTTCTTGCCGAATGTTAGTAATCGGAGCTCGATGATGATGTCAGAGGGCGACGATAAAGGCAGCGACAATCCATTCAACAATAACAGTACATCGTTTGCATTCAGTTCTGGTGTGGAATCTGGATCGTTCTTTTATGTCGGTGCAGCAAGCAAAACAGATTCTGCCACTGTTCTTCCACAATCTTGTCCAAGAATTGAGGTTTCAGTTCCACGTTCAGAAAATTATTTTCAATCTCATCTTGTAGAACCATCTCTGTCTTTACCTCAAAACAGAATCAGTCATCATCCGCAAGTGGGACTCTCTACGTCATGCGTCGAGAGGGATGATGTGGGTAAGACCGTGTCAGATGATCAAAGAACCTTTGATTCTTTGTGTGGTGGTGGTGAACATTCTTCACCACTCGATGAGCAACCGGATGAAGGGGAGCAAAGAGGCAGTGGGGATTCTATGGCTGGTGGTGGTAGTGGCGCTCCCTCGGAGGATGGATATAACTGGAGAAAATATGGACAAAAACAGGTTAAAGGAAGCGAGTACCCTCGTAGTTATTATAAGTGCACGCATCCAAACTGTCAGGTCAAGAAAAAAGTCGAGCGATCTAATGAGGGTCATATAACAGAGATCATCTATAAAGGAACACATAATCACCCAAAGCCCTCGCCCTATCGACGAGCTGCGACCGGACCTTCGGATTCCCATATCAATATGCAACTAGACATCTCTGCACAAGGTGGCGAACAGACTGCTGAAGGTCTCCTTTGGGGAGATTCACAGAAACGGATTCCAAATGGAGCTCCTGATTGGATGCATGAGAACCTTGAGGTGACTTCTTCAGCATCCTTGGGTCCTGAATATGGCAATCAGCCTAATACTTCACAGGCTCAAAATGGCAGTCATGTTGAAACAGTTGAAGCCATTGATGCCTCATCCACATTCTCTAATGATGAAGATGAAGATGATAGGGGCACCCATGGCAGTGTAACATTGGGATATGAGGGGGAAGGAGATGAGTCTGAGTCTAAGAAAAGGAAACTTGACGCTTATGTAACGGAAATGAGCGGGGCCACTAGAGCTATCCGTGAGCCTAGAGTTGTCGTGCAGACTACCAGCGAAGTAGATATTCTGGACGATGGCTATCGCTGGCGCAAATACGGGCAGAAGGTTGTAAAAGGAAATCCAAATCCTAGGAGTTACTACAAGTGCACAAATCCTGGCTGCACAGTGAGGAAGCATGTCGAGCGGGCATCACATGACCTGAAGTCTGTGATCACGACATACGAAGGAAAGCACAATCATGATGTTCCTGCTGCTCGCAACAGCAGCCACATCAATTCCAGTACATCCAGTCCAGTAACCACACAAAACTCGACCGCAACGACTCAAACTCATATTCACAGGCCGGGGCCACCCCAGCCTCAGAACACCATTCCAAGATTTGAAAGGCCAGGGTTTAGCCTTCCTGGAAGACAGCAGATGGGCAGTGCCCATGGGTTCTCTTTTGGAATGAACCAACCTGGACTGAGAAATCTGACAATGGCAGCCGTTGGCCAAGCCAAGCTTCCTGTTCTGCCAATGCATCCATACTTAGCACAAGCACACCATGTTAATGACATGGGTTTCTTGTTGCCTAAAGGAGAGCCCAATGTAGAACCTACATCTGACCTTGGCTTGAACTTTTCCCATGGTTCAACCGTGTATCAGCAAATTATGAGTAGGCTTCCACTTGGACCTGAGATGTGA 2223 47.01 MGRTDDNVAIIGDWVPPSPSTRAFFSAMLGEDVGSRPAMDTITIDKTEELFQRPREHPVSNNTVARGGIPSANSGDRSMDLSSFSGQKFRGGLVERIAARAGFNAPRLNTESIRSTDQSLDSDAKSPYLTIPPGLSPTTLLDSPVFLSNSLAQQSPTTGKFPFLPNVSNRSSMMMSEGDDKGSDNPFNNNSTSFAFSSGVESGSFFYVGAASKTDSATVLPQSCPRIEVSVPRSENYFQSHLVEPSLSLPQNRISHHPQVGLSTSCVERDDVGKTVSDDQRTFDSLCGGGEHSSPLDEQPDEGEQRGSGDSMAGGGSGAPSEDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSNEGHITEIIYKGTHNHPKPSPYRRAATGPSDSHINMQLDISAQGGEQTAEGLLWGDSQKRIPNGAPDWMHENLEVTSSASLGPEYGNQPNTSQAQNGSHVETVEAIDASSTFSNDEDEDDRGTHGSVTLGYEGEGDESESKKRKLDAYVTEMSGATRAIREPRVVVQTTSEVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCTVRKHVERASHDLKSVITTYEGKHNHDVPAARNSSHINSSTSSPVTTQNSTATTQTHIHRPGPPQPQNTIPRFERPGFSLPGRQQMGSAHGFSFGMNQPGLRNLTMAAVGQAKLPVLPMHPYLAQAHHVNDMGFLLPKGEPNVEPTSDLGLNFSHGSTVYQQIMSRLPLGPEM 740
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6472290 6476034 - Cp4.1LG08g08130.1 Cpe08g00812 473778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00812 740 SUPERFAMILY WRKY DNA-binding domain 528 596 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cpe08g00812 740 Pfam WRKY DNA -binding domain 537 593 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe08g00812 740 Pfam WRKY DNA -binding domain 322 378 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe08g00812 740 Gene3D WRKY domain 315 381 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cpe08g00812 740 MobiDBLite consensus disorder prediction 58 80 - -
Cpe08g00812 740 MobiDBLite consensus disorder prediction 598 630 - -
Cpe08g00812 740 MobiDBLite consensus disorder prediction 590 637 - -
Cpe08g00812 740 SMART WRKY_cls 536 595 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe08g00812 740 SMART WRKY_cls 321 379 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe08g00812 740 ProSiteProfiles WRKY domain profile. 316 380 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe08g00812 740 PANTHER WRKY TRANSCRIPTION FACTOR SUSIBA2-LIKE ISOFORM X1 107 692 - -
Cpe08g00812 740 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 107 692 IPR044810 GO:0003700
Cpe08g00812 740 MobiDBLite consensus disorder prediction 471 504 - -
Cpe08g00812 740 MobiDBLite consensus disorder prediction 275 327 - -
Cpe08g00812 740 ProSiteProfiles WRKY domain profile. 531 596 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe08g00812 740 Gene3D WRKY domain 523 589 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cpe08g00812 740 SUPERFAMILY WRKY DNA-binding domain 320 380 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00677 Cpe-Chr4:6812437 Cpe08g00812 Cpe-Chr8:6472290 6.60E-15 dispersed
Cpe08g00812 Cpe-Chr8:6472290 Cpe08g00850 Cpe-Chr8:6729186 1.64E-95 dispersed
Cpe18g00254 Cpe-Chr18:4198269 Cpe08g00812 Cpe-Chr8:6472290 7.52E-113 transposed
Cpe14g00818 Cpe-Chr14:6556851 Cpe08g00812 Cpe-Chr8:6472290 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49879 PF03106 WRKY 3.00E-24 CL0274 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00812 K18835 - csv:101207853 1213.36