Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00829 ATGGCGGACTCCGACAACGACTCTGCCGGCGGCAACCACAAATCACCGTCTCCGCGGGAGCACGACAGACTCCTCCCGATCGCGAACGTCGGCCGGATTATGAAAAAGGCCCTCCCAGGGAACGCGAAAATCTCAAAGGAAGCCAAAGAGACCGTCCAAGAATGCGTCTCGGAGTTCATCAGTTTCATCACAGGCGAGGCCTCCGACAAGTGCCATAAGGAGAAGCGAAAGACGATCAACGGCGACGATTTACTTTGGGCCATGGCGACGTTAGGGTTCGAAGATTACGTCGATCCTCTCAAGGTTTACCTCCAGCGCTTTCGAGAAATTGAAGGCGAGAAGACTACGCTCGCCTCGCGCGACGGCGGTAGTGGTAGCGCTGCCGCTTCTACAGCTGCGAATAGTGCGTATTTTGACGGCGGCGCTGAATTTGGTGGTGGGATGGGAACGATGATGACGATGAATATGCCTCCAAATGTTTATGGTTCTAATGGGCCGCGTTGGGATGGGCCTGCGTTTAATTCTACGGGTCGGCCCAACTAG 543 55.25 MADSDNDSAGGNHKSPSPREHDRLLPIANVGRIMKKALPGNAKISKEAKETVQECVSEFISFITGEASDKCHKEKRKTINGDDLLWAMATLGFEDYVDPLKVYLQRFREIEGEKTTLASRDGGSGSAAASTAANSAYFDGGAEFGGGMGTMMTMNMPPNVYGSNGPRWDGPAFNSTGRPN 180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6614923 6615465 + Cp4.1LG08g08290.1 Cpe08g00829 473795

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00829 180 MobiDBLite consensus disorder prediction 1 24 - -
Cpe08g00829 180 ProSitePatterns NF-YB/HAP3 subunit signature. 55 71 IPR003956 GO:0005634|GO:0006355|GO:0043565
Cpe08g00829 180 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 24 88 IPR003958 -
Cpe08g00829 180 PRINTS CCAAT-binding transcription factor subunit A signature 52 70 - -
Cpe08g00829 180 PRINTS CCAAT-binding transcription factor subunit A signature 71 89 - -
Cpe08g00829 180 PRINTS CCAAT-binding transcription factor subunit A signature 90 108 - -
Cpe08g00829 180 SUPERFAMILY Histone-fold 22 127 IPR009072 GO:0046982
Cpe08g00829 180 Gene3D Histone, subunit A 12 138 IPR009072 GO:0046982
Cpe08g00829 180 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 159 IPR027113 GO:0001228|GO:0006355|GO:0016602
Cpe08g00829 180 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2 1 159 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00829 K08065 NFYB, HAP3; nuclear transcription Y subunit beta - csv:101204640 280.796
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g01389 Cpe-Chr5:9768058 Cpe08g00829 Cpe-Chr8:6614923 3.79E-64 dispersed
Cpe08g00829 Cpe-Chr8:6614923 Cpe16g00379 Cpe-Chr16:5421766 1.65E-63 dispersed
Cpe08g00829 Cpe-Chr8:6614923 Cpe08g00834 Cpe-Chr8:6637103 7.65E-17 proximal
Cpe11g00930 Cpe-Chr11:7853417 Cpe08g00829 Cpe-Chr8:6614923 7.83E-36 transposed
Cpe12g00955 Cpe-Chr12:8091978 Cpe08g00829 Cpe-Chr8:6614923 4.40E-53 transposed
Cpe14g00788 Cpe-Chr14:6208777 Cpe08g00829 Cpe-Chr8:6614923 7.08E-42 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe08g00833 . 53 159 CCAAT-HAP3 Transcription Factor Family AT5G47670 79.4 3.8e-46 182.2
Cpe14g00788 . 2 98 CCAAT-HAP3 Transcription Factor Family AT5G47670 87.6 1.5e-45 180.3
Cpe16g00379 . 6 117 CCAAT-HAP3 Transcription Factor Family AT5G47670 61.6 5.0e-38 155.2
Cpe05g01389 . 6 117 CCAAT-HAP3 Transcription Factor Family AT5G47670 60.7 1.1e-37 154.1
Cpe08g00833 . 40 181 CCAAT-HAP3 Transcription Factor Family AT1G21970 61.8 3.2e-48 189.1
Cpe14g00788 . 1 140 CCAAT-HAP3 Transcription Factor Family AT1G21970 66.4 3.9e-46 182.2
Cpe16g00379 . 1 128 CCAAT-HAP3 Transcription Factor Family AT4G14540 85.3 4.8e-56 214.5
Cpe05g01389 . 1 122 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.9 2.6e-54 208.8
Cpe08g00829 . 1 152 CCAAT-HAP3 Transcription Factor Family AT4G14540 69.7 2.7e-51 198.7
Cpe14g00570 . 24 130 CCAAT-HAP3 Transcription Factor Family AT4G14540 85.2 1.5e-46 183.0
Cpe01g00718 . 28 134 CCAAT-HAP3 Transcription Factor Family AT4G14540 84.3 3.8e-45 178.3
Cpe08g01124 . 46 140 CCAAT-HAP3 Transcription Factor Family AT4G14540 87.4 5.5e-44 174.5
Cpe01g00231 . 14 132 CCAAT-HAP3 Transcription Factor Family AT4G14540 69.7 1.2e-43 173.3
Cpe03g00156 . 22 115 CCAAT-HAP3 Transcription Factor Family AT4G14540 87.2 1.6e-43 172.9
Cpe12g00955 . 46 141 CCAAT-HAP3 Transcription Factor Family AT4G14540 74.0 7.7e-38 154.1
Cpe01g00231 . 1 117 CCAAT-HAP3 Transcription Factor Family AT2G38880 82.9 2.2e-50 195.7
Cpe08g01124 . 25 140 CCAAT-HAP3 Transcription Factor Family AT2G38880 79.3 1.2e-48 189.9
Cpe03g00156 . 1 115 CCAAT-HAP3 Transcription Factor Family AT2G38880 79.1 3.5e-48 188.3
Cpe08g00829 . 1 110 CCAAT-HAP3 Transcription Factor Family AT2G38880 73.0 1.7e-42 169.5
Cpe05g01389 . 1 113 CCAAT-HAP3 Transcription Factor Family AT2G38880 70.8 2.2e-42 169.1
Cpe16g00379 . 20 113 CCAAT-HAP3 Transcription Factor Family AT2G38880 80.9 3.7e-42 168.3
Cpe01g00718 . 12 121 CCAAT-HAP3 Transcription Factor Family AT2G38880 72.7 1.4e-41 166.4
Cpe14g00570 . 22 117 CCAAT-HAP3 Transcription Factor Family AT2G38880 77.1 1.6e-40 162.9
Cpe12g00955 . 42 137 CCAAT-HAP3 Transcription Factor Family AT2G38880 74.0 1.1e-38 156.8
Cpe12g00955 . 45 141 CCAAT-HAP3 Transcription Factor Family AT2G47810 85.6 1.2e-43 173.3
Cpe08g00829 . 19 114 CCAAT-HAP3 Transcription Factor Family AT2G47810 78.1 1.3e-40 163.3
Cpe16g00379 . 18 117 CCAAT-HAP3 Transcription Factor Family AT2G47810 72.0 4.1e-39 158.3
Cpe05g01389 . 18 117 CCAAT-HAP3 Transcription Factor Family AT2G47810 71.0 5.3e-39 157.9
Cpe14g00570 . 27 122 CCAAT-HAP3 Transcription Factor Family AT2G47810 74.0 1.7e-37 152.9
Cpe01g00718 . 31 126 CCAAT-HAP3 Transcription Factor Family AT2G47810 72.9 3.8e-37 151.8
Cpe03g00156 . 1 167 CCAAT-HAP3 Transcription Factor Family AT2G37060 73.9 6.5e-59 224.2
Cpe01g00231 . 7 145 CCAAT-HAP3 Transcription Factor Family AT2G37060 75.4 1.4e-53 206.5
Cpe08g01124 . 25 140 CCAAT-HAP3 Transcription Factor Family AT2G37060 83.3 6.1e-49 191.0
Cpe05g01389 . 6 116 CCAAT-HAP3 Transcription Factor Family AT2G37060 76.6 2.7e-44 175.6
Cpe16g00379 . 6 116 CCAAT-HAP3 Transcription Factor Family AT2G37060 75.7 3.5e-44 175.3
Cpe14g00570 . 26 131 CCAAT-HAP3 Transcription Factor Family AT2G37060 73.6 4.7e-41 164.9
Cpe08g00829 . 1 127 CCAAT-HAP3 Transcription Factor Family AT2G37060 65.0 6.1e-41 164.5
Cpe01g00718 . 30 123 CCAAT-HAP3 Transcription Factor Family AT2G37060 77.7 1.3e-38 156.8
Cpe12g00955 . 45 147 CCAAT-HAP3 Transcription Factor Family AT2G37060 68.9 1.2e-36 150.2
Cpe14g00570 . 14 128 CCAAT-HAP3 Transcription Factor Family AT2G13570 75.0 1.9e-44 176.4
Cpe16g00379 . 22 123 CCAAT-HAP3 Transcription Factor Family AT2G13570 81.4 4.3e-44 175.3
Cpe05g01389 . 22 117 CCAAT-HAP3 Transcription Factor Family AT2G13570 85.4 1.3e-43 173.7
Cpe01g00718 . 18 132 CCAAT-HAP3 Transcription Factor Family AT2G13570 74.1 8.1e-43 171.0
Cpe08g00829 . 8 114 CCAAT-HAP3 Transcription Factor Family AT2G13570 73.8 9.0e-42 167.5
Cpe03g00156 . 7 120 CCAAT-HAP3 Transcription Factor Family AT2G13570 69.7 1.5e-41 166.8
Cpe08g01124 . 31 139 CCAAT-HAP3 Transcription Factor Family AT2G13570 70.2 4.4e-41 165.2
Cpe01g00231 . 27 121 CCAAT-HAP3 Transcription Factor Family AT2G13570 73.7 3.2e-39 159.1
Cpe12g00955 . 46 146 CCAAT-HAP3 Transcription Factor Family AT2G13570 72.3 1.6e-38 156.8
Cpe16g00379 . 1 122 CCAAT-HAP3 Transcription Factor Family AT5G47640 78.6 1.4e-51 199.9
Cpe05g01389 . 1 121 CCAAT-HAP3 Transcription Factor Family AT5G47640 79.2 4.2e-51 198.4
Cpe08g00829 . 1 117 CCAAT-HAP3 Transcription Factor Family AT5G47640 79.0 8.7e-49 190.7
Cpe14g00570 . 22 127 CCAAT-HAP3 Transcription Factor Family AT5G47640 79.2 2.2e-44 176.0
Cpe01g00231 . 27 137 CCAAT-HAP3 Transcription Factor Family AT5G47640 70.9 5.5e-43 171.4
Cpe01g00718 . 26 131 CCAAT-HAP3 Transcription Factor Family AT5G47640 78.3 5.5e-43 171.4
Cpe08g01124 . 35 140 CCAAT-HAP3 Transcription Factor Family AT5G47640 75.5 3.6e-42 168.7
Cpe03g00156 . 11 124 CCAAT-HAP3 Transcription Factor Family AT5G47640 71.1 6.1e-42 167.9
Cpe12g00955 . 46 142 CCAAT-HAP3 Transcription Factor Family AT5G47640 78.4 3.7e-39 158.7
Cpe03g00156 . 12 167 CCAAT-HAP3 Transcription Factor Family AT3G53340 74.2 1.2e-57 219.9
Cpe01g00231 . 12 134 CCAAT-HAP3 Transcription Factor Family AT3G53340 82.4 3.8e-54 208.4
Cpe08g01124 . 36 140 CCAAT-HAP3 Transcription Factor Family AT3G53340 87.9 4.0e-48 188.3
Cpe16g00379 . 6 125 CCAAT-HAP3 Transcription Factor Family AT3G53340 70.8 7.1e-45 177.6
Cpe05g01389 . 6 116 CCAAT-HAP3 Transcription Factor Family AT3G53340 74.8 4.6e-44 174.9
Cpe08g00829 . 14 127 CCAAT-HAP3 Transcription Factor Family AT3G53340 71.9 7.3e-42 167.5
Cpe14g00570 . 15 119 CCAAT-HAP3 Transcription Factor Family AT3G53340 74.3 8.1e-41 164.1
Cpe01g00718 . 19 123 CCAAT-HAP3 Transcription Factor Family AT3G53340 73.3 2.6e-39 159.1
Cpe12g00955 . 45 147 CCAAT-HAP3 Transcription Factor Family AT3G53340 69.9 2.4e-37 152.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000266 8 6 6 8 9 3 3 3 3 2 3 3 6 4 4 6 3 10 6 3 4 4 4 3 4 3 2 16 9 4 152
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49880 PF00808 CBFD_NFYB_HMF 1.10E-27 CL0012 Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe08g00829 Cpe_Chr08 FPKM 1.211409 1.504931 9.539425 9.132061 6.857018 7.115674 7.98422 3.344532 4.044191 4.091706