Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00829 ATGGCGGACTCCGACAACGACTCTGCCGGCGGCAACCACAAATCACCGTCTCCGCGGGAGCACGACAGACTCCTCCCGATCGCGAACGTCGGCCGGATTATGAAAAAGGCCCTCCCAGGGAACGCGAAAATCTCAAAGGAAGCCAAAGAGACCGTCCAAGAATGCGTCTCGGAGTTCATCAGTTTCATCACAGGCGAGGCCTCCGACAAGTGCCATAAGGAGAAGCGAAAGACGATCAACGGCGACGATTTACTTTGGGCCATGGCGACGTTAGGGTTCGAAGATTACGTCGATCCTCTCAAGGTTTACCTCCAGCGCTTTCGAGAAATTGAAGGCGAGAAGACTACGCTCGCCTCGCGCGACGGCGGTAGTGGTAGCGCTGCCGCTTCTACAGCTGCGAATAGTGCGTATTTTGACGGCGGCGCTGAATTTGGTGGTGGGATGGGAACGATGATGACGATGAATATGCCTCCAAATGTTTATGGTTCTAATGGGCCGCGTTGGGATGGGCCTGCGTTTAATTCTACGGGTCGGCCCAACTAG 543 55.25 MADSDNDSAGGNHKSPSPREHDRLLPIANVGRIMKKALPGNAKISKEAKETVQECVSEFISFITGEASDKCHKEKRKTINGDDLLWAMATLGFEDYVDPLKVYLQRFREIEGEKTTLASRDGGSGSAAASTAANSAYFDGGAEFGGGMGTMMTMNMPPNVYGSNGPRWDGPAFNSTGRPN 180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6614923 6615465 + Cp4.1LG08g08290.1 Cpe08g00829 473795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00829 180 MobiDBLite consensus disorder prediction 1 24 - -
Cpe08g00829 180 ProSitePatterns NF-YB/HAP3 subunit signature. 55 71 IPR003956 GO:0005634|GO:0006355|GO:0043565
Cpe08g00829 180 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 24 88 IPR003958 -
Cpe08g00829 180 PRINTS CCAAT-binding transcription factor subunit A signature 52 70 - -
Cpe08g00829 180 PRINTS CCAAT-binding transcription factor subunit A signature 71 89 - -
Cpe08g00829 180 PRINTS CCAAT-binding transcription factor subunit A signature 90 108 - -
Cpe08g00829 180 SUPERFAMILY Histone-fold 22 127 IPR009072 GO:0046982
Cpe08g00829 180 Gene3D Histone, subunit A 12 138 IPR009072 GO:0046982
Cpe08g00829 180 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 159 IPR027113 GO:0001228|GO:0006355|GO:0016602
Cpe08g00829 180 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2 1 159 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g01389 Cpe-Chr5:9768058 Cpe08g00829 Cpe-Chr8:6614923 3.79E-64 dispersed
Cpe08g00829 Cpe-Chr8:6614923 Cpe16g00379 Cpe-Chr16:5421766 1.65E-63 dispersed
Cpe08g00829 Cpe-Chr8:6614923 Cpe08g00834 Cpe-Chr8:6637103 7.65E-17 proximal
Cpe11g00930 Cpe-Chr11:7853417 Cpe08g00829 Cpe-Chr8:6614923 7.83E-36 transposed
Cpe12g00955 Cpe-Chr12:8091978 Cpe08g00829 Cpe-Chr8:6614923 4.40E-53 transposed
Cpe14g00788 Cpe-Chr14:6208777 Cpe08g00829 Cpe-Chr8:6614923 7.08E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49880 PF00808 CBFD_NFYB_HMF 1.10E-27 CL0012 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00829 K08065 - csv:101204640 280.796