Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe08g00833 | ATGAAGCATTTGATTACAGCTTTGAATGTATTGTTAACGGCAAACAAGTCATCCTCTGCCAACAATACTCACAACACCAACCATCAGCAAGTAAATGGTCGTAACCTTGCGACCAACTCCCCTGTGACTGGCTCTACCCCTGCCTCGATCGCTGCCACCAACAATGAGCAGAGCCAACAATGCATTGTGCGGGAGCAGGACCAATACATGCCGATCGCTAATGTGAGACGCATCATGCGACGAATCTTACCCTCTCATGCAAAGATATCTGATGATGCAAAGGAAACCATCCAAGAATGCGTGTCTGAGTACATCAGCTTCATTACTGGCGAGGCCAACGAGCGATGCCAAAGGGAGCAGCGTAAGACAGTGACAGTAGAAGATGTCCTTTGGGCCATCGGGAAGCTAGGGTTTGACGATTACATTGAGCCATTAACTGTCTTTCTCAACCGCTACCGCGAGTCGGAGAGTGATCGAATCCGTACGGAACCAATCCTGAGGCGCAATGTGGATTATGGACCACAAGTAGGGATGGTACCACCGTATGGCCAGACGTTTCAAATAGGGCACGTCCCATCAGGAATGTTTGATGCAATGGGCGGGTACTACGATGGAGGTGGCAATGGCGGGGCGAGCTCGGGCAATGGTAATCAACTTTGA | 660 | 50.0 | MKHLITALNVLLTANKSSSANNTHNTNHQQVNGRNLATNSPVTGSTPASIAATNNEQSQQCIVREQDQYMPIANVRRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTVEDVLWAIGKLGFDDYIEPLTVFLNRYRESESDRIRTEPILRRNVDYGPQVGMVPPYGQTFQIGHVPSGMFDAMGGYYDGGGNGGASSGNGNQL | 219 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 6631549 | 6632208 | - | Cp4.1LG08g08400.1 | Cpe08g00833 | 473799 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe08g00833 | 219 | PRINTS | CCAAT-binding transcription factor subunit A signature | 116 | 134 | - | - | |
Cpe08g00833 | 219 | PRINTS | CCAAT-binding transcription factor subunit A signature | 135 | 153 | - | - | |
Cpe08g00833 | 219 | PRINTS | CCAAT-binding transcription factor subunit A signature | 97 | 115 | - | - | |
Cpe08g00833 | 219 | SUPERFAMILY | Histone-fold | 66 | 159 | IPR009072 | GO:0046982 | |
Cpe08g00833 | 219 | PANTHER | CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED | 39 | 185 | IPR027113 | GO:0001228|GO:0006355|GO:0016602 | |
Cpe08g00833 | 219 | Gene3D | Histone, subunit A | 51 | 170 | IPR009072 | GO:0046982 | |
Cpe08g00833 | 219 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 70 | 133 | IPR003958 | - | |
Cpe08g00833 | 219 | MobiDBLite | consensus disorder prediction | 17 | 55 | - | - | |
Cpe08g00833 | 219 | ProSitePatterns | NF-YB/HAP3 subunit signature. | 100 | 116 | IPR003956 | GO:0005634|GO:0006355|GO:0043565 | |
Cpe08g00833 | 219 | PANTHER | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-9 | 39 | 185 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe08g00833 | Cpe-Chr8:6631549 | Cpe14g00788 | Cpe-Chr14:6208777 | 3.48E-93 | dispersed | |
Cpe08g00833 | Cpe-Chr8:6631549 | Cpe08g00835 | Cpe-Chr8:6637329 | 9.65E-37 | proximal | |
Cpe08g00832 | Cpe-Chr8:6626325 | Cpe08g00833 | Cpe-Chr8:6631549 | 5.19E-62 | tandem | |
Cpe08g00833 | Cpe-Chr8:6631549 | Cpe08g00834 | Cpe-Chr8:6637103 | 3.82E-25 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
49882 | PF00808 | CBFD_NFYB_HMF | 1.60E-25 | CL0012 | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe08g00833 | K08065 | - | csv:116402762 | 292.352 |