Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00833 ATGAAGCATTTGATTACAGCTTTGAATGTATTGTTAACGGCAAACAAGTCATCCTCTGCCAACAATACTCACAACACCAACCATCAGCAAGTAAATGGTCGTAACCTTGCGACCAACTCCCCTGTGACTGGCTCTACCCCTGCCTCGATCGCTGCCACCAACAATGAGCAGAGCCAACAATGCATTGTGCGGGAGCAGGACCAATACATGCCGATCGCTAATGTGAGACGCATCATGCGACGAATCTTACCCTCTCATGCAAAGATATCTGATGATGCAAAGGAAACCATCCAAGAATGCGTGTCTGAGTACATCAGCTTCATTACTGGCGAGGCCAACGAGCGATGCCAAAGGGAGCAGCGTAAGACAGTGACAGTAGAAGATGTCCTTTGGGCCATCGGGAAGCTAGGGTTTGACGATTACATTGAGCCATTAACTGTCTTTCTCAACCGCTACCGCGAGTCGGAGAGTGATCGAATCCGTACGGAACCAATCCTGAGGCGCAATGTGGATTATGGACCACAAGTAGGGATGGTACCACCGTATGGCCAGACGTTTCAAATAGGGCACGTCCCATCAGGAATGTTTGATGCAATGGGCGGGTACTACGATGGAGGTGGCAATGGCGGGGCGAGCTCGGGCAATGGTAATCAACTTTGA 660 50.0 MKHLITALNVLLTANKSSSANNTHNTNHQQVNGRNLATNSPVTGSTPASIAATNNEQSQQCIVREQDQYMPIANVRRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTVEDVLWAIGKLGFDDYIEPLTVFLNRYRESESDRIRTEPILRRNVDYGPQVGMVPPYGQTFQIGHVPSGMFDAMGGYYDGGGNGGASSGNGNQL 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6631549 6632208 - Cp4.1LG08g08400.1 Cpe08g00833 473799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00833 219 PRINTS CCAAT-binding transcription factor subunit A signature 116 134 - -
Cpe08g00833 219 PRINTS CCAAT-binding transcription factor subunit A signature 135 153 - -
Cpe08g00833 219 PRINTS CCAAT-binding transcription factor subunit A signature 97 115 - -
Cpe08g00833 219 SUPERFAMILY Histone-fold 66 159 IPR009072 GO:0046982
Cpe08g00833 219 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 39 185 IPR027113 GO:0001228|GO:0006355|GO:0016602
Cpe08g00833 219 Gene3D Histone, subunit A 51 170 IPR009072 GO:0046982
Cpe08g00833 219 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 70 133 IPR003958 -
Cpe08g00833 219 MobiDBLite consensus disorder prediction 17 55 - -
Cpe08g00833 219 ProSitePatterns NF-YB/HAP3 subunit signature. 100 116 IPR003956 GO:0005634|GO:0006355|GO:0043565
Cpe08g00833 219 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-9 39 185 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g00833 Cpe-Chr8:6631549 Cpe14g00788 Cpe-Chr14:6208777 3.48E-93 dispersed
Cpe08g00833 Cpe-Chr8:6631549 Cpe08g00835 Cpe-Chr8:6637329 9.65E-37 proximal
Cpe08g00832 Cpe-Chr8:6626325 Cpe08g00833 Cpe-Chr8:6631549 5.19E-62 tandem
Cpe08g00833 Cpe-Chr8:6631549 Cpe08g00834 Cpe-Chr8:6637103 3.82E-25 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49882 PF00808 CBFD_NFYB_HMF 1.60E-25 CL0012 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00833 K08065 - csv:116402762 292.352