Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00850 ATGGACCCCACTGATGCCGACCTCGCCGATCCTTCTCATGTCCGCCTTTCCGTTTCCTCTGAACCTTCCTCCGCCTCCGCTGCTGGCGCCAAGTACAAGCTACTGTCTCCGGCTAAGCTCCCGATCTCCAGGTCCCCTTGCATTACCATCCCTCCCGGTCTCAGTCCCACTTCCTTTCTCGAGTCTCCCGTTTTGCTCACCAACTTAAAGGTAGAGCCTTCTCCGACTACCGGGTCCTTTACTAAGCTTCCAATGGCACACGACTCTTCTAGCTCAGCTATTTATTCAATGACCACCATGGCTTTCTCAAATACGCATGCCTCAGACGAAGGAAGATCCAGCTATTTCGAGTTCAAACCTTATGCTGGACCGAATATGGTTCCTGCAGATTTGAGTCATCGGAAAGGCGAACAATCCAGAGAAGTTCAAGTTCAGGGCCAACCTCAACCATTTACTGCTCCGCCCATGACTAAAAGTGAGATCAACGTCAATTCTAATGATTTGAGTCGGTCGATTCAGATGGATACAGTTGCCTCGAGGGCTAGTGTTCCTGAAGTTGATGGAGACGATTTCAACCATAGTTTGAACACAAATACCAGGGTTCAGCCCCAACAATCTGATCCAAAAGCCAGTGGCATTCAAGTAGTTTCTGATAGGTTATCTGATGATGGATATAACTGGCGTAAGTATGGACAGAAGCATGTTAAAGGGAGTGAATTTCCGCGTAGCTATTATAAATGTACCCATCCTAACTGTGAAGTGAAAAAACTCTTCGAACGCTCTCACGATGGACAGATAGTCGATATTATCTATAAGGGTACCCATGATCATCCTAAACCTCAGCCAAGTCGGCGATATTCTGCCAGTGCTTCGATGAATGTTCAAGAAGATGGGCCTGATAAGCCTTCACCTTTAACTGGTCAAGATGACAGGTCCTGCGTAATATATGCTCGGGCGGTGCGTACCATTGAGCCAAATGGAACTCCAGAACCATCCCATGCTGCTAACGATAGCATGGCCGAAGGCGTAGGAACAACTCTGCCACCCAGGAGTCATGATGAGGTTGACGATGATGACATATTCTCGAAGCGGAGGAAAATGGAACTTGGAGGTTTTGATGTCTGCCCAATGGTTAAGCCGATCAGGGAACCACGTGTTGTGGTTCAAACTCTAAGCGAGGTTGATATACTGGATGATGGGTATCGCTGGCGTAAATACGGCCAGAAGGTAGTGAGAGGAAACCCGAACCCAAGGAGTTATTACAAGTGCACAAATGTTGGATGCCCTGTTAGAAAACATGTTGAAAGAGCATCCCATGACCCAAAAGCTGTTATAACTACATACGAGGGGAAACATAATCACGACGTTCCCACAGCAAAAACGAGTAGCCATGAGGTCCAAGGCTCATTGACAATTGCACCATCAAGGTACAGACTTGAAGAGAGTGACACCATAAGCCTTGATCTTGGCGTTGGCATTGGCGCCGGTGGTGAGAATAGATCGAACGAATACAGGCAGGCATTTCATTCTCAACTTGCTGAAAACCAAAATCCAAATGGCAATTTCAACTTCGAAATAGTTCAAGAAAACTCACCCCCAGCCTATTTCGGTGTTCTCGATCGGGGTATAAGCCAGCACGGATCAAGAGAGAGTTTAAGCGAAAGCCGCACCATGTCGCTAAACCATTCGTCTCACCCATATCCTCCTAGCATTGAGAGAATACTAACAGGGCCATAA 1737 47.27 MDPTDADLADPSHVRLSVSSEPSSASAAGAKYKLLSPAKLPISRSPCITIPPGLSPTSFLESPVLLTNLKVEPSPTTGSFTKLPMAHDSSSSAIYSMTTMAFSNTHASDEGRSSYFEFKPYAGPNMVPADLSHRKGEQSREVQVQGQPQPFTAPPMTKSEINVNSNDLSRSIQMDTVASRASVPEVDGDDFNHSLNTNTRVQPQQSDPKASGIQVVSDRLSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQIVDIIYKGTHDHPKPQPSRRYSASASMNVQEDGPDKPSPLTGQDDRSCVIYARAVRTIEPNGTPEPSHAANDSMAEGVGTTLPPRSHDEVDDDDIFSKRRKMELGGFDVCPMVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNVGCPVRKHVERASHDPKAVITTYEGKHNHDVPTAKTSSHEVQGSLTIAPSRYRLEESDTISLDLGVGIGAGGENRSNEYRQAFHSQLAENQNPNGNFNFEIVQENSPPAYFGVLDRGISQHGSRESLSESRTMSLNHSSHPYPPSIERILTGP 578
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6729186 6736106 - Cp4.1LG08g08540.1 Cpe08g00850 473816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00850 578 SUPERFAMILY WRKY DNA-binding domain 389 457 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cpe08g00850 578 Gene3D WRKY domain 384 450 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cpe08g00850 578 Gene3D WRKY domain 206 281 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cpe08g00850 578 ProSiteProfiles WRKY domain profile. 216 280 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe08g00850 578 MobiDBLite consensus disorder prediction 195 212 - -
Cpe08g00850 578 ProSiteProfiles WRKY domain profile. 392 457 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe08g00850 578 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 18 553 IPR044810 GO:0003700
Cpe08g00850 578 SUPERFAMILY WRKY DNA-binding domain 218 280 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cpe08g00850 578 MobiDBLite consensus disorder prediction 546 578 - -
Cpe08g00850 578 MobiDBLite consensus disorder prediction 546 566 - -
Cpe08g00850 578 Pfam WRKY DNA -binding domain 222 278 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe08g00850 578 Pfam WRKY DNA -binding domain 398 454 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe08g00850 578 SMART WRKY_cls 397 456 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe08g00850 578 SMART WRKY_cls 221 279 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe08g00850 578 MobiDBLite consensus disorder prediction 1 27 - -
Cpe08g00850 578 MobiDBLite consensus disorder prediction 272 357 - -
Cpe08g00850 578 PANTHER WRKY TRANSCRIPTION FACTOR 20 ISOFORM X1-RELATED 18 553 - -
Cpe08g00850 578 MobiDBLite consensus disorder prediction 195 215 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g00812 Cpe-Chr8:6472290 Cpe08g00850 Cpe-Chr8:6729186 1.64E-95 dispersed
Cpe08g00850 Cpe-Chr8:6729186 Cpe14g00818 Cpe-Chr14:6556851 5.11E-94 dispersed
Cpe11g00361 Cpe-Chr11:1979817 Cpe08g00850 Cpe-Chr8:6729186 1.55E-12 dispersed
Cpe02g01138 Cpe-Chr2:10375710 Cpe08g00850 Cpe-Chr8:6729186 3.23E-91 transposed
Cpe04g00677 Cpe-Chr4:6812437 Cpe08g00850 Cpe-Chr8:6729186 1.17E-82 transposed
Cpe05g00995 Cpe-Chr5:6508052 Cpe08g00850 Cpe-Chr8:6729186 1.30E-65 transposed
Cpe14g00767 Cpe-Chr14:6036846 Cpe08g00850 Cpe-Chr8:6729186 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49883 PF03106 WRKY 3.30E-25 CL0274 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00850 - - bhj:120090463 1010.36