Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe08g00854 | ATGGCGGAATTGGACTTAGGAACTCGATATTTCTCCGCCGCCGACCACCACGATGACGACGATCCCCACCAATCCCACGGCGGCGCTGACGATGTCCTTGGCCGCCGCCCTCGCGGCCGACCAGCAGGTTCAAAAAACAAGCCGAAGCCGCCGGTTATCATCACCCGCGAGAGCGCCAACACGCTACGTGTCCACATCTTAGAGGTCAACAGCGGCTGTGACATATTTGATTGCATCGCCGCCTACGCGCGTCGGCGACAGCGTGGGATCTGTATTTTGAGCGGTAGTGGCAACGTCAGTAACGTCGGAATCCGCCAACCAGCAGCGGCCGGAGCCGTACTGACTCTTCATGGGAGATTCGAGATTTTGTCGCTATCTGGATCGTTTCTTCCGCCGCCTGCTCCGGCTAGCGCCACTAGTTTGACTATATTTTTGGCCGGAGGGCAGGGACAGGTGGTCGGCGGGACGGTGGCTGGAGAATTAACAGCGGCAGGACCAGTGATTTTGATTGCAGCTTCGTTTAGTAATGTGGCGTATGAGAGATTACCAGTGGAGGAGGAAGATCAGCAGCAGCAAGTCCCCGTCGTAGGCGGCGGAGTTGGCGGCGGCGACAACCCATTTCAAGACGCATCAAATTCAGGAGTTCCATTTTTGAATTATCCACTTCATATGCAAAATATTCAGCTTCCACCTTTCTGA | 699 | 55.51 | MAELDLGTRYFSAADHHDDDDPHQSHGGADDVLGRRPRGRPAGSKNKPKPPVIITRESANTLRVHILEVNSGCDIFDCIAAYARRRQRGICILSGSGNVSNVGIRQPAAAGAVLTLHGRFEILSLSGSFLPPPAPASATSLTIFLAGGQGQVVGGTVAGELTAAGPVILIAASFSNVAYERLPVEEEDQQQQVPVVGGGVGGGDNPFQDASNSGVPFLNYPLHMQNIQLPPF | 232 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 6759896 | 6760594 | + | Cp4.1LG08g08460.1 | Cpe08g00854 | 473820 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe08g00854 | 232 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 | 19 | 231 | IPR014476 | GO:0003680 | |
| Cpe08g00854 | 232 | Gene3D | - | 62 | 193 | - | - | |
| Cpe08g00854 | 232 | MobiDBLite | consensus disorder prediction | 13 | 54 | - | - | |
| Cpe08g00854 | 232 | MobiDBLite | consensus disorder prediction | 13 | 38 | - | - | |
| Cpe08g00854 | 232 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 63 | 176 | IPR005175 | - | |
| Cpe08g00854 | 232 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 23 | 19 | 231 | - | - | |
| Cpe08g00854 | 232 | CDD | DUF296 | 63 | 174 | IPR005175 | - | |
| Cpe08g00854 | 232 | ProSiteProfiles | PPC domain profile profile. | 59 | 195 | IPR005175 | - | |
| Cpe08g00854 | 232 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 59 | 191 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe08g00456 | Cpe-Chr8:2934971 | Cpe08g00854 | Cpe-Chr8:6759896 | 6.24E-54 | dispersed | |
| Cpe08g00854 | Cpe-Chr8:6759896 | Cpe12g00049 | Cpe-Chr12:266568 | 9.75E-84 | dispersed | |
| Cpe17g00317 | Cpe-Chr17:2159794 | Cpe08g00854 | Cpe-Chr8:6759896 | 3.33E-68 | dispersed | |
| Cpe14g00955 | Cpe-Chr14:8063080 | Cpe08g00854 | Cpe-Chr8:6759896 | 7.91E-116 | wgd | |
| Cpe15g00220 | Cpe-Chr15:1903902 | Cpe08g00854 | Cpe-Chr8:6759896 | 1.36E-86 | wgd | |
| Cpe05g00183 | Cpe-Chr5:963252 | Cpe08g00854 | Cpe-Chr8:6759896 | 1.49E-84 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe08g00854 | - | - | cmax:111498487 | 374.785 |