Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00855 ATGGATTCACGGGAGAGGTCGATGCCTTCTGTTCATCAACCTCAGCCACAATCTACTCCACCCAATAGAATGATGGGAAATGCTTCTTATTCCACCAATTTTCCCAACAACAACAACAATGCTTCCCCATTGATCAACCCCAATTCCACCGCTGCTCAGATGATGTCATCCGCATCGCGATTTCCCTTCAACTCCATGATGGGTTCTGCTTCTAAGCCTTCGGACTCGCCTAATGCCGGTTCTTATGACGGATCGCAGTCCGAATTGCGTGGTGGTGGCTTCAACATTGATTCTGGGAAGAAGAAGAGAGGCCGTCCGAGGAAGTATTCGCCTGATGGCAACATCGCTTTGGGTTTATCGCCAACCCCCGTCACTTCTTCCGCCGCTCCCGGTGATTCTGCTGGCATGCACTCGGCGGATCCTCGCCCGAAGAAGAACAGGGGACGGCCGCCGGGTACTGGGAAGAAGCAGATGGATGCTTTGGGAACTGGCGGTGTTGGCTTTACCCCTCATGTCATTCTGGTGAAGCCCGGTGAGGGCCGATATGAAATCATCTCTCTATCAGGCAACTTCTTGATTTCTGACAGTAATGGCAATCGAAATCGAACTGGTCGCTTAAGCGTGTCTCTAGCAAGTGCAGATGGACAAGTCCTTGGTGGAATTACGGACATGTTAACAGCAGCATCTACAGTTCAGGTTATAGTGGGTAGCTTTCTTGTGGATGGGAAAAAGCTGGACTCAAGTACACAGAAATCTGGGCCATCTTCTACATCACCCAATATGTTAAACTTCAGTGCACCTGCGGCGGCAACAGGCTGCCCCTCTGAAGGTGCATCAAATAATTCATCAGATGACAATGATGGTAGCCCTTTAAGCCGGGCGCCTGGAATCTACACCAATGCCAACCAACCAATTCATAATATGCAGATGTATCAATTGTGGGGTAGTCGAAATCAATAA 960 49.58 MDSRERSMPSVHQPQPQSTPPNRMMGNASYSTNFPNNNNNASPLINPNSTAAQMMSSASRFPFNSMMGSASKPSDSPNAGSYDGSQSELRGGGFNIDSGKKKRGRPRKYSPDGNIALGLSPTPVTSSAAPGDSAGMHSADPRPKKNRGRPPGTGKKQMDALGTGGVGFTPHVILVKPGEGRYEIISLSGNFLISDSNGNRNRTGRLSVSLASADGQVLGGITDMLTAASTVQVIVGSFLVDGKKLDSSTQKSGPSSTSPNMLNFSAPAAATGCPSEGASNNSSDDNDGSPLSRAPGIYTNANQPIHNMQMYQLWGSRNQ 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6762323 6770942 - Cp4.1LG08g08550.1 Cpe08g00855 473821

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00855 319 Gene3D - 162 253 - -
Cpe08g00855 319 MobiDBLite consensus disorder prediction 1 163 - -
Cpe08g00855 319 MobiDBLite consensus disorder prediction 244 301 - -
Cpe08g00855 319 Pfam Plants and Prokaryotes Conserved (PCC) domain 167 238 IPR005175 -
Cpe08g00855 319 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 82 179 IPR039605 GO:0003680
Cpe08g00855 319 SUPERFAMILY AF0104/ALDC/Ptd012-like 165 239 - -
Cpe08g00855 319 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 179 315 IPR039605 GO:0003680
Cpe08g00855 319 SMART AT_hook_2 100 112 IPR017956 GO:0003677
Cpe08g00855 319 SMART AT_hook_2 144 156 IPR017956 GO:0003677
Cpe08g00855 319 MobiDBLite consensus disorder prediction 244 265 - -
Cpe08g00855 319 MobiDBLite consensus disorder prediction 274 301 - -
Cpe08g00855 319 MobiDBLite consensus disorder prediction 8 85 - -
Cpe08g00855 319 CDD DUF296 179 238 IPR005175 -
Cpe08g00855 319 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 13-LIKE ISOFORM X1 179 315 - -
Cpe08g00855 319 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 13-LIKE ISOFORM X1 82 179 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00855 - - - cmax:111498434 568.54
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe05g00713 Cpe08g00855 CCT
Cpe05g00713 Cpe08g00855 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g00855 Cpe-Chr8:6762323 Cpe13g00070 Cpe-Chr13:546126 1.26E-28 dispersed
Cpe05g00433 Cpe-Chr5:2472532 Cpe08g00855 Cpe-Chr8:6762323 2.69E-21 transposed
Cpe14g00956 Cpe-Chr14:8067717 Cpe08g00855 Cpe-Chr8:6762323 1.53E-152 wgd
Cpe15g00219 Cpe-Chr15:1895199 Cpe08g00855 Cpe-Chr8:6762323 1.88E-62 wgd
Cpe05g00182 Cpe-Chr5:955937 Cpe08g00855 Cpe-Chr8:6762323 2.34E-60 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g329 Blo02g01107 Blo03g00211 . Bda08g00520 Bpe05g00642 Bpe07g00112 . . . . Cma02g01007 Cma15g01221 Car02g00752 Car15g01102 . . Cpe05g00713 . . . . . . . . . . . . . . Cone8ag0311 Cone12ag0311 Cone6ag0774 . . Csa05g00288 Chy09g01218 . . . . . . . Bma05g00817 Bma12g00188 . Cmo02g01022 Cmo15g01287 . . . . Cpe08g00855 . Bhi12g00246 . . . . . Lcy12g1658 Cla01g00271 Cam01g0279 Cec01g0271 Cco01g0286 Clacu01g0278 Cmu01g0266 Cre09g2242 Lsi09g00265 . . Cme09g01755
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005186 0 1 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe08g00855 Cpe_Chr08 FPKM 21.949703 25.738501 0.871605 1.072046 2.550988 2.169289 2.363658 0.0 0.212353 0.0