Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00859 ATGACGGATTACCGGTTTTCCACCATGAATCTCTGGACCGACGAGAACGCGTCGGCCATGGATGCTTTCACGAACTCCGATCTGTCCTCTTACTGGGCTCCGTCGGCGGCGTCGTCTCAATCTCTCCACCACCCACCTCCGACGCAATCCTCCGCCTCCACCACTACTCCACCGTCCGTCCCTTCCAAGTCTATCGCTGTCTTGAACCAGGAGACTCTGCAGCAGCGTCTCCAGGCGCTCATCGACGGTGCTAGAGAGAGTTGGACGTACGCGATTTTCTGGCAGTCGTCGTATGATTATTCCGGCGGGTCGGTTTTGGGGTGGGGAGATGGGTATTATAAAGGCGAGGAGAATAAAGGGAGAGGAAAAACGAAAATGGTTTCCTCTGCGGCGGAGCAGGCTCACCGGAAGAAGGTGCTCCGGGAGCTTAACTCGTTGATTTCCGGCTCCGCTACCGGACTGGACGATGTGGTGGATGAAGAGGTTACCGACACCGAATGGTTCTTTTTGGTTTCGATGACTCAGTCGTTTGTTAATGGAGTTGGGTTACCGAGTCAGGCGCTTTTAAGCTCCCGGCCGATTTGGATATCCGGCGCCGACCGACTGTCGGCGTCGGCATGTGATCGCGCTAGACAGGGGAGGATCTTCGGGTTGCAGACGATGGTGTGTATTCCATTACCAAACGGCGTCGTCGAAATGGGTTCGACGGAAGCGATTTACATAACGACGGATTTGATGAACAAGGTCAAGACTCTGTTTAATTTCAACAATCTGGAAACGGGTTCTTGGCAATCGGGAACCACCGGCGTCACCGTCGCCGACGAAGGGGAAAACGACCCATCGTCGTTATGGATCAGTGAGCCGTCGAGCACCATTGAAATGAAGGATTCGATTACCACCACCGTACTTTCCGGCGGCGCGTCGGCGAAGCCAATCCATTCAGAAAATCCCAGTTCGAGCAGCTTAACGGAAAATGCCAGCAGGAAACAGACCCCAAGCTTGAATTTCCCCGATTACGCCGCCGCGGCCGCCACCACGAACCCATCATTCAAGTCGGAATCCGGTGGGATGTTGAGCTTCGGCAACAAAAGCCTCTTCTCCGGTAACTCACAGAATGAGAAAAAGAAATCTCCGAGTAGTCGGAGAACCACCGACGAAGGGATCCTCTGTTTCACCTCCGACGCGATCTTACCCTTTTTCGGGAAGGTAAAATCCGGCGACTCCGACCACTCAGATCCAGAAGCTTCAGCGATTCCAGAAGTGGATAGTTGTATAAAACCATCAGAACCCGAAAAACGACCGAGAAAACGCGGCAGAAAACCGGCGAACGGAAGAGAAGAGCCATTGAATCACGTGGAAGCAGAGAGACAACGCCGGGAAAAACTTAACCAGAAATTCTACGCTCTCCGGGCAGTAGTACCAAACGTATCAAAAATGGACAAAGCCTCATTGCTCGGCGACGCCGTCTCCTACATTAATGAACTGAAATTGAAGCTAGAAATGGCGGAATCAAAGAAGACGGAGATCGAAAAACAGCTAGAATTCATGAAAAAAGACGGCGGAACAGGACGGAAAGACATCGGAAACTACACGAATACAGTAAATGAAGATCTGAAAATGGAGATTCAGGTGAAAATCATGGGATCGGACGCGATGATCCGAGTTGAATGCAGTAAAAAGAATCATCCGGCGGCGAGATTGATGGCGGCGTTGAAGGATTTGGATTTGGAAATGATTCACGCGAGTGTTTCTGTAGTGAATGATTTGATGATTCAACAGGCGGCGGTGAAGATGGAGAGCAGAGTATATACGACGGAGCAGCTGAAAATGGTGCTGATGGCGGAAGTTCGACGGTGCCGGCGTTGA 1866 51.66 MTDYRFSTMNLWTDENASAMDAFTNSDLSSYWAPSAASSQSLHHPPPTQSSASTTTPPSVPSKSIAVLNQETLQQRLQALIDGARESWTYAIFWQSSYDYSGGSVLGWGDGYYKGEENKGRGKTKMVSSAAEQAHRKKVLRELNSLISGSATGLDDVVDEEVTDTEWFFLVSMTQSFVNGVGLPSQALLSSRPIWISGADRLSASACDRARQGRIFGLQTMVCIPLPNGVVEMGSTEAIYITTDLMNKVKTLFNFNNLETGSWQSGTTGVTVADEGENDPSSLWISEPSSTIEMKDSITTTVLSGGASAKPIHSENPSSSSLTENASRKQTPSLNFPDYAAAAATTNPSFKSESGGMLSFGNKSLFSGNSQNEKKKSPSSRRTTDEGILCFTSDAILPFFGKVKSGDSDHSDPEASAIPEVDSCIKPSEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQKFYALRAVVPNVSKMDKASLLGDAVSYINELKLKLEMAESKKTEIEKQLEFMKKDGGTGRKDIGNYTNTVNEDLKMEIQVKIMGSDAMIRVECSKKNHPAARLMAALKDLDLEMIHASVSVVNDLMIQQAAVKMESRVYTTEQLKMVLMAEVRRCRR 621
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6788078 6789943 - Cp4.1LG08g08520.1 Cpe08g00859 473825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00859 621 PANTHER MYC 11 616 IPR045084 GO:0003700|GO:0006355
Cpe08g00859 621 Gene3D - 438 521 IPR036638 GO:0046983
Cpe08g00859 621 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 446 495 IPR011598 GO:0046983
Cpe08g00859 621 SMART finulus 452 501 IPR011598 GO:0046983
Cpe08g00859 621 MobiDBLite consensus disorder prediction 363 385 - -
Cpe08g00859 621 MobiDBLite consensus disorder prediction 305 333 - -
Cpe08g00859 621 PANTHER TRANSCRIPTION FACTOR MYC2 11 616 - -
Cpe08g00859 621 Coils Coil 492 519 - -
Cpe08g00859 621 MobiDBLite consensus disorder prediction 425 456 - -
Cpe08g00859 621 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 445 513 IPR036638 GO:0046983
Cpe08g00859 621 Pfam Helix-loop-helix DNA-binding domain 450 495 IPR011598 GO:0046983
Cpe08g00859 621 MobiDBLite consensus disorder prediction 405 456 - -
Cpe08g00859 621 MobiDBLite consensus disorder prediction 37 62 - -
Cpe08g00859 621 CDD bHLH_AtAIB_like 443 518 - -
Cpe08g00859 621 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 73 253 IPR025610 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g00859 Cpe-Chr8:6788078 Cpe08g00916 Cpe-Chr8:7224831 6.31E-20 dispersed
Cpe19g00115 Cpe-Chr19:925435 Cpe08g00859 Cpe-Chr8:6788078 1.09E-06 dispersed
Cpe05g00017 Cpe-Chr5:65689 Cpe08g00859 Cpe-Chr8:6788078 1.09E-12 transposed
Cpe12g00368 Cpe-Chr12:2613869 Cpe08g00859 Cpe-Chr8:6788078 1.86E-22 transposed
Cpe14g00960 Cpe-Chr14:8090753 Cpe08g00859 Cpe-Chr8:6788078 0 wgd
Cpe15g00214 Cpe-Chr15:1833374 Cpe08g00859 Cpe-Chr8:6788078 0 wgd
Cpe05g00176 Cpe-Chr5:929089 Cpe08g00859 Cpe-Chr8:6788078 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49885 PF14215 bHLH-MYC_N 3.20E-53 CL0161 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00859 K13422 - csv:101205372 913.294