Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00870 ATGAGCTTTCAAGATATCGAGGCTGGTCGTCCGTTTGCTTCTTCGAGGAGAGACCTCGTCAATGGCAAACAAGATCCCACGCAAGCCGTTGCCTCGGGTATTTTTCAGATTAATACTGCCGTCGCTACGTTTCAGAGGCTTGTTAACACCTTGGGAACGCCGAAGGATACTCCCGAGCTACGCGAGAAGCTGCACAAGACCAGGTTACATATTGGACAGTTGGTTAAAGACACCTCTGCTAAACTTAAACAAGCCAGTGAAATAGATCATCACGCCGGAGTTAACGCCAGCAAGAAAATTGCAGATGCTAAGCTTGCAAAAGATTTTCAAGCAGTGTTGAAAGAATTTCAGAAGGCTCAACGACTTGCAGCTGAGAGGGAAACAGCATATACACCGTTTGTTCCCCAGGCAGTTCTACCTTCTAGCTACACAGCCGGTGAGTCAGATGCAAGCTCAGAAAATAATCTTGAACAGCGTGCCCTCCTTGTGGAATCCAGGAGACAAGAGGTCTTGCTGCTGGACAATGAAATTGCCTTCAATGAGGCAATAATTGAGGAAAGAGAACAAGGTATTCATGAAATCCAGCAGCAAATTGGAGAGGTCAATGAAATTTTCAAAGATCTTGCTGTTCTAGTTCATGAACAGGGAGCCATGATTGATGATATTGGATCCAACATTGAGAGTTCCCACGCTGCAACATCACAGGGAACAACTCAGCTTGTCAAAGCTTCAAAGACACAAAGATCAAATTCATCTCTGGCTTGCTTGCTTTTGGTGATATTTGGTATAATCCTTCTCATTGTGATCATAATAGTTGTTGCTTAA 825 44.24 MSFQDIEAGRPFASSRRDLVNGKQDPTQAVASGIFQINTAVATFQRLVNTLGTPKDTPELREKLHKTRLHIGQLVKDTSAKLKQASEIDHHAGVNASKKIADAKLAKDFQAVLKEFQKAQRLAAERETAYTPFVPQAVLPSSYTAGESDASSENNLEQRALLVESRRQEVLLLDNEIAFNEAIIEEREQGIHEIQQQIGEVNEIFKDLAVLVHEQGAMIDDIGSNIESSHAATSQGTTQLVKASKTQRSNSSLACLLLVIFGIILLIVIIIVVA 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6869032 6874211 - Cp4.1LG08g08700.1 Cpe08g00870 473836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00870 274 SUPERFAMILY t-snare proteins 24 236 IPR010989 GO:0016020|GO:0016192
Cpe08g00870 274 Gene3D - 21 134 - -
Cpe08g00870 274 PANTHER SYNTAXIN 5 272 IPR045242 -
Cpe08g00870 274 PANTHER SYNTAXIN OF PLANTS PROTEIN 5 272 - -
Cpe08g00870 274 CDD SynN 24 158 IPR006011 GO:0016020
Cpe08g00870 274 Pfam SNARE domain 218 269 IPR000727 -
Cpe08g00870 274 SMART tSNARE_6 176 243 IPR000727 -
Cpe08g00870 274 CDD SNARE_Qa 184 242 - -
Cpe08g00870 274 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 181 243 IPR000727 -
Cpe08g00870 274 Pfam Syntaxin-like protein 31 130 IPR006011 GO:0016020
Cpe08g00870 274 SMART SynN_4 16 128 IPR006011 GO:0016020
Cpe08g00870 274 ProSitePatterns Syntaxin / epimorphin family signature. 187 226 IPR006012 GO:0005484|GO:0006886|GO:0016020
Cpe08g00870 274 Gene3D - 174 274 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g00870 Cpe-Chr8:6869032 Cpe11g00890 Cpe-Chr11:7181930 1.77E-13 dispersed
Cpe14g00975 Cpe-Chr14:8249458 Cpe08g00870 Cpe-Chr8:6869032 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00870 - K08488 bhj:120089793 449.514