Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00881 ATGAGTAGCAGTGAGATGGAGAAACCACCCAAAGACAAGGAGACCAAGACACCGCCGCTTACCACCCAGGAGCAGACTTCAACCACTAGCGCTGGCGCAGTTAATCCTGATTGGTCGGGATTTCAGGCATATTCTCCAATGCCTCCGCATGGTTTCTTGGCATCAAGCCCCCAAGCCCACCCATATATGTGGGGAGTTCAGCATATTATGCCTCCTTATGGCACGCCTCCACATCCATATGTTGCAATGTACCCCCCTGGTGGCATATATGCTCATCCTTCCATTCCTCCGGGATCGTATCCTTTTAGCCCATTTGCAATGCCCTCTCCAAATGGCATCACTGAGGCCTCTGGTAATACAGCAGGCAGCTTAGATGGGGAGGGTAAGCCACCTGAAGTGAAGGAAAAGCTTCCAATTAAAAGATCAAAAGGAAGTTTGGGCAGTTTGAACATGATTACGGGGAAGAACAATGAGCTCGGTAAAACATCTGGAACATCTGCCAATGGAGCATACTCTAAAAGTGGTGAGAGTGCTAGCGAAGGTACAAGTGAAGGAAGCGATGCCAATTCTCAAAATGAATCACAACCTAAGTTAGGTTCCAGGCAAGACACTTTGGAAGGTGAAGCATCTCAGAACGGCAACTCCATGCATGGTACTCAAAATGGAGGATCTAATACTCAGGCAATGACTGTCATTCCATTGGCTGCTGCTGGGGCCCCGGGAGTCATTCCTGGTCCCACGACCAACTTAAATATTGGAATGGACTATTGGGGTGCATCATCCGCTATCCCTGCAATGCATGGAAAGGTTCCATCAACTCGAGTAGCTGGAGGATTAGTTGGATCTCGGGATAGTGTACAGTCACAGCTTTGGTTGCAGGATGAGAGAGAGCTTAAAAGACAGAGAAGAAAGCAATCAAATAGAGAATCTGCACGGCGATCCCGGTTACGCAAGCAGGCAGAGTGTGATGAACTAGGACACCGAGCTGAAGCCTTACAAGAAGAAAATGCCAGTCTTAGGTCTGAAGTGAACCGGATAAGGAGTGAATATGAACAATTACTTTCAGAGAATACTTCTCTGAAGGAACGACTCGGTGAAGTTACGGGAAACGAAGAAGTAAGGGCCAGCAGGAACGGCCAGCATTCGAGTAACGAAACCACACAACTTACAGAGTCGGAGGTTGTACAAGTTGGTATCAAGAATTGA 1206 47.84 MSSSEMEKPPKDKETKTPPLTTQEQTSTTSAGAVNPDWSGFQAYSPMPPHGFLASSPQAHPYMWGVQHIMPPYGTPPHPYVAMYPPGGIYAHPSIPPGSYPFSPFAMPSPNGITEASGNTAGSLDGEGKPPEVKEKLPIKRSKGSLGSLNMITGKNNELGKTSGTSANGAYSKSGESASEGTSEGSDANSQNESQPKLGSRQDTLEGEASQNGNSMHGTQNGGSNTQAMTVIPLAAAGAPGVIPGPTTNLNIGMDYWGASSAIPAMHGKVPSTRVAGGLVGSRDSVQSQLWLQDERELKRQRRKQSNRESARRSRLRKQAECDELGHRAEALQEENASLRSEVNRIRSEYEQLLSENTSLKERLGEVTGNEEVRASRNGQHSSNETTQLTESEVVQVGIKN 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6961788 6967227 - Cp4.1LG08g08860.1 Cpe08g00881 473847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00881 401 Pfam bZIP transcription factor 295 357 IPR004827 GO:0003700|GO:0006355
Cpe08g00881 401 SUPERFAMILY Leucine zipper domain 298 354 IPR046347 GO:0003700|GO:0006355
Cpe08g00881 401 SMART brlzneu 295 359 IPR004827 GO:0003700|GO:0006355
Cpe08g00881 401 MobiDBLite consensus disorder prediction 1 42 - -
Cpe08g00881 401 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 396 IPR044827 GO:0003700|GO:0006355|GO:0043565
Cpe08g00881 401 CDD bZIP_plant_GBF1 300 350 IPR045314 GO:0003700|GO:0006355
Cpe08g00881 401 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 302 317 IPR004827 GO:0003700|GO:0006355
Cpe08g00881 401 Coils Coil 315 363 - -
Cpe08g00881 401 MobiDBLite consensus disorder prediction 1 18 - -
Cpe08g00881 401 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 297 360 IPR004827 GO:0003700|GO:0006355
Cpe08g00881 401 MobiDBLite consensus disorder prediction 357 401 - -
Cpe08g00881 401 MobiDBLite consensus disorder prediction 111 226 - -
Cpe08g00881 401 Pfam Disordered region downstream of MFMR 135 261 - -
Cpe08g00881 401 Pfam G-box binding protein MFMR 1 96 IPR012900 -
Cpe08g00881 401 MobiDBLite consensus disorder prediction 146 226 - -
Cpe08g00881 401 Gene3D - 298 368 - -
Cpe08g00881 401 PANTHER BZIP TRANSCRIPTION FACTOR FAMILY PROTEIN 1 396 - -
Cpe08g00881 401 MobiDBLite consensus disorder prediction 373 395 - -
Cpe08g00881 401 MobiDBLite consensus disorder prediction 19 36 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g00881 Cpe-Chr8:6961788 Cpe19g00799 Cpe-Chr19:6026592 1.73E-66 dispersed
Cpe14g00989 Cpe-Chr14:8347870 Cpe08g00881 Cpe-Chr8:6961788 0 wgd
Cpe05g00154 Cpe-Chr5:801123 Cpe08g00881 Cpe-Chr8:6961788 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49890 PF16596 MFMR_assoc 9.00E-51 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00881 K09060 - csv:101206627 711.449