Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe08g00899 | ATGGCGCAGTTTAAGCTGACGGAAGGAGCAGTGATGATGATATGCAAAAGGGAATCGACTGCAGAGACGTTCCAGCCGGTTGTGCAAGTAATTGACTTGAAATTGGTTAACACTGCGCAACAATCGGGTAGTGAGAGGTACAGATTGTTGCTTTCTGATGGAACACATTACCAGCAAGGAATGTTGGGGACTCAGCTGAATGGATTGGTGAAGTCCGGGAAGTTGCAGAAAGGTTCCATAGTTCAACTGAAGCAATATGTTTGTAATCCCGTTCAAGAACGCCTGATTATAATTGTCATCGAGTTGGACGTGGTAGTGGAAATGTGCGAATTTATTGGCGAACCTGTACCAGCAACGAGATCGGTAACAGGTGCATTTAGTGGAAACCCCCAATCCTCTGTGGTGACTTCACCCAGTAGTGGAATAGCTGGTAAAATGAATGTATCTAGTGCATCTTCTGAACTGCCTAAAGTGAATCAATCACATGCATCGCATGTGGGAGCTTATTCAAACACTCCGGAATCTGGAAGATACACTGCATCAATTGCGCCTCCTCTTTACCCTAATAAGACAGATCCTGGAACAAGGTTTAACGGGTCATCTTCTTTAAGTGGGTCATATGGTGATCAGAAAATGGCATATCACAACAATGGATCAGATAATCCAAGGCCACCTCTAAATGCTTATGCTTGTCCTCAGCCAACATATCAGCAGCCACCTTCAATGTACAGCAACAGAGGGCCAGTAGCAAAAAACGAAGCTCCCCCAAGGATCATGCCTATTACTGCTCTGAACCCTTACCAAGGAAGGTGGACAATAAAGGCTCGAGTTACTTCAAAAGGAGAACTTAGACACTACAATAATCCTCGTGGAGATGGGAAAGTGTTTTCATTTGATCTACTTGATGCACACCGTGGAGAAATACGAGTTACGTGTTTCAACATGGTAGCTGACCAGTTTTACAACCAGATTGAACCAGGTAAAGTTTACTTCATTTCTAAAGGAAGCTTGAAACCTGCTCAAAAGAACTTCAACCATCTCAAAAATGACTTTGAAATATTTCTTGAGAGCACATCAACAATCCAACCTTGCTTTGAGGATGACCAATCAATCCCCCAACAGCAGTTCCATTTCCATCAGATTAGTGAGATTGAAGGCATGGACAACAACAGTGTTGTAGATTTAATTGGTGTTGTTACGTCCATTAATCCTTCAACTTCTATAATGAGAAAAAATGGTATCGAGACTCAGAAGAGAACCCTTCAGTTGAAAGATATGTCTGGGCGAAGTGTTGAATTGACTCTTTGGGGAAACTTTTGTCAAGCAGAAGGGCAACGATTGCAAAATATGTGCGACTCAGGGATGTTCCCAGTCTTGGCTGTGAAATCTGGTAGGGTGAGTGACTTCAATGGGAAGGCAGTGGGAACCATTTCATCAAGTCAGCTGTCTGTAGAGCCAGATTTTCCTGAGGCTCGTACTCTGAGAGAGTGGTTTGAGAAGGAAGGGAGGAGTACTCCGTCTGTGTCTATATCGAGGGAAGTTTCTAGCATAGGCAGGACAGATGTCCGTAAGACCATATCTCAAATAAAAGATGAGAGGTTAGGAACATCTGAGAAGCCTGATTGGATTACTGTTAGTGCAACCGTTTCATTTATTAAGGTAGACAACTTCTGTTACACAGCATGTCCTATCATGATCGGGGACCGACAATGCAGCAAAAAGGTTACAAATAATGGAGATGGAAAGTGGAGATGTGACCGGTGTGATCAGTCTGTTGACGAATGTGATTACAGATACATACTCCAGCTGCAAATACAGGATCATACTGGTTTAACTTGGGTAACTGCATTTCAAGAAGGTGGTGAGGAAATCATGGGCGTACCTGCAAAAAGATTGTATTATTTGAAATACGAAGAGCAAGATGATGAGAAATTTGCAGAAATCATCCGTAAGGTTCTTTTTACAAAATTTATCATGAAGCTGAAAATAAAGGAAGAGACTTTTAGTGATGAACAGAGAGTAAGGTCAACAGTGGTGAAAGCAGAAAGCATTAATTTTTCGACTGAGTCCCGATTTCTTCTAGACTTAATGGAAAAGCTCAGGGCAGAGAACGCCAGTTCTGTTACCCCAAAGACAGAAAGCACCATTCATGATCTCGGACTTCGTGGTGCCGGGAATATTGGTGGTGGACAGTTCGTGTCACCCAGTCGAAATATTAGCAATGTTAGCAGCAGAGAATATGGTACACCAAACCTAGGTGTTCAGTATGAGAACCAATACAGCAGTTCTAGGCCTTCTCCATCCATGGTGCATAATTCACACACTTACTGCAACAGCTGCGGGGGCTCTGGTCACAGCTCGATGAACTGCCCAAGTATAACAAGTGCTCCTACGCATCCCATTGGAGGGGGAATGTATTCAAATCGATCTTCTGGCCCTTCCGGTGGTGGTGTCTCTGGGGAATGCTTTAAATGCCATCAAACAGGGCATTGGGCCAGGGATTGCCCTGGTTTGGCTGCTGTCCCTCCAGCTTATGGTAACAGTGGCTTCACGGCTAGGTAA | 2562 | 43.75 | MAQFKLTEGAVMMICKRESTAETFQPVVQVIDLKLVNTAQQSGSERYRLLLSDGTHYQQGMLGTQLNGLVKSGKLQKGSIVQLKQYVCNPVQERLIIIVIELDVVVEMCEFIGEPVPATRSVTGAFSGNPQSSVVTSPSSGIAGKMNVSSASSELPKVNQSHASHVGAYSNTPESGRYTASIAPPLYPNKTDPGTRFNGSSSLSGSYGDQKMAYHNNGSDNPRPPLNAYACPQPTYQQPPSMYSNRGPVAKNEAPPRIMPITALNPYQGRWTIKARVTSKGELRHYNNPRGDGKVFSFDLLDAHRGEIRVTCFNMVADQFYNQIEPGKVYFISKGSLKPAQKNFNHLKNDFEIFLESTSTIQPCFEDDQSIPQQQFHFHQISEIEGMDNNSVVDLIGVVTSINPSTSIMRKNGIETQKRTLQLKDMSGRSVELTLWGNFCQAEGQRLQNMCDSGMFPVLAVKSGRVSDFNGKAVGTISSSQLSVEPDFPEARTLREWFEKEGRSTPSVSISREVSSIGRTDVRKTISQIKDERLGTSEKPDWITVSATVSFIKVDNFCYTACPIMIGDRQCSKKVTNNGDGKWRCDRCDQSVDECDYRYILQLQIQDHTGLTWVTAFQEGGEEIMGVPAKRLYYLKYEEQDDEKFAEIIRKVLFTKFIMKLKIKEETFSDEQRVRSTVVKAESINFSTESRFLLDLMEKLRAENASSVTPKTESTIHDLGLRGAGNIGGGQFVSPSRNISNVSSREYGTPNLGVQYENQYSSSRPSPSMVHNSHTYCNSCGGSGHSSMNCPSITSAPTHPIGGGMYSNRSSGPSGGGVSGECFKCHQTGHWARDCPGLAAVPPAYGNSGFTAR | 853 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 7098340 | 7103059 | - | Cp4.1LG08g08950.1 | Cpe08g00899 | 473865 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe08g00899 | 853 | CDD | RPA1_DBD_A | 260 | 363 | - | - | |
Cpe08g00899 | 853 | Pfam | Replication factor-A protein 1, N-terminal domain | 6 | 106 | IPR007199 | GO:0003677|GO:0005634|GO:0006260 | |
Cpe08g00899 | 853 | ProSiteProfiles | Zinc finger CCHC-type profile. | 777 | 792 | IPR001878 | GO:0003676|GO:0008270 | |
Cpe08g00899 | 853 | MobiDBLite | consensus disorder prediction | 193 | 223 | - | - | |
Cpe08g00899 | 853 | Pfam | Replication protein A OB domain | 381 | 484 | IPR031657 | - | |
Cpe08g00899 | 853 | Gene3D | - | 772 | 840 | - | - | |
Cpe08g00899 | 853 | Gene3D | - | 257 | 366 | IPR012340 | - | |
Cpe08g00899 | 853 | SMART | c2hcfinal6 | 821 | 837 | IPR001878 | GO:0003676|GO:0008270 | |
Cpe08g00899 | 853 | SMART | c2hcfinal6 | 776 | 792 | IPR001878 | GO:0003676|GO:0008270 | |
Cpe08g00899 | 853 | Gene3D | - | 4 | 119 | IPR012340 | - | |
Cpe08g00899 | 853 | SUPERFAMILY | Retrovirus zinc finger-like domains | 808 | 839 | IPR036875 | GO:0003676|GO:0008270 | |
Cpe08g00899 | 853 | SUPERFAMILY | Nucleic acid-binding proteins | 4 | 113 | IPR012340 | - | |
Cpe08g00899 | 853 | PANTHER | REPLICATION PROTEIN A SUBUNIT | 5 | 735 | - | - | |
Cpe08g00899 | 853 | CDD | RPA1_DBD_C | 526 | 699 | IPR013955 | - | |
Cpe08g00899 | 853 | CDD | RPA1_DBD_B | 392 | 499 | - | - | |
Cpe08g00899 | 853 | CDD | RPA1N | 9 | 106 | IPR007199 | GO:0003677|GO:0005634|GO:0006260 | |
Cpe08g00899 | 853 | Gene3D | - | 509 | 700 | IPR012340 | - | |
Cpe08g00899 | 853 | ProSiteProfiles | Zinc finger CCHC-type profile. | 822 | 836 | IPR001878 | GO:0003676|GO:0008270 | |
Cpe08g00899 | 853 | MobiDBLite | consensus disorder prediction | 151 | 243 | - | - | |
Cpe08g00899 | 853 | SUPERFAMILY | Nucleic acid-binding proteins | 376 | 504 | IPR012340 | - | |
Cpe08g00899 | 853 | Pfam | Replication factor-A C terminal domain | 542 | 693 | IPR013955 | - | |
Cpe08g00899 | 853 | PANTHER | REPLICATION FACTOR A 1, RFA1 | 5 | 735 | IPR004591 | GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310 | |
Cpe08g00899 | 853 | TIGRFAM | rpa1: replication factor-a protein 1 (rpa1) | 236 | 699 | IPR004591 | GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310 | |
Cpe08g00899 | 853 | Pfam | Zinc knuckle | 821 | 836 | IPR001878 | GO:0003676|GO:0008270 | |
Cpe08g00899 | 853 | Gene3D | - | 370 | 508 | IPR012340 | - | |
Cpe08g00899 | 853 | SUPERFAMILY | Nucleic acid-binding proteins | 523 | 700 | IPR012340 | - | |
Cpe08g00899 | 853 | Pfam | OB-fold nucleic acid binding domain | 271 | 356 | IPR004365 | GO:0003676 | |
Cpe08g00899 | 853 | SUPERFAMILY | Nucleic acid-binding proteins | 257 | 370 | IPR012340 | - | |
Cpe08g00899 | 853 | MobiDBLite | consensus disorder prediction | 151 | 178 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe08g00899 | Cpe-Chr8:7098340 | Cpe11g01184 | Cpe-Chr11:9703803 | 2.99E-69 | dispersed | |
Cpe04g01458 | Cpe-Chr4:11631581 | Cpe08g00899 | Cpe-Chr8:7098340 | 1.29E-88 | transposed | |
Cpe14g01003 | Cpe-Chr14:8460607 | Cpe08g00899 | Cpe-Chr8:7098340 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe08g00899 | K07466 | - | csv:101211358 | 1466.06 |