Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00899 ATGGCGCAGTTTAAGCTGACGGAAGGAGCAGTGATGATGATATGCAAAAGGGAATCGACTGCAGAGACGTTCCAGCCGGTTGTGCAAGTAATTGACTTGAAATTGGTTAACACTGCGCAACAATCGGGTAGTGAGAGGTACAGATTGTTGCTTTCTGATGGAACACATTACCAGCAAGGAATGTTGGGGACTCAGCTGAATGGATTGGTGAAGTCCGGGAAGTTGCAGAAAGGTTCCATAGTTCAACTGAAGCAATATGTTTGTAATCCCGTTCAAGAACGCCTGATTATAATTGTCATCGAGTTGGACGTGGTAGTGGAAATGTGCGAATTTATTGGCGAACCTGTACCAGCAACGAGATCGGTAACAGGTGCATTTAGTGGAAACCCCCAATCCTCTGTGGTGACTTCACCCAGTAGTGGAATAGCTGGTAAAATGAATGTATCTAGTGCATCTTCTGAACTGCCTAAAGTGAATCAATCACATGCATCGCATGTGGGAGCTTATTCAAACACTCCGGAATCTGGAAGATACACTGCATCAATTGCGCCTCCTCTTTACCCTAATAAGACAGATCCTGGAACAAGGTTTAACGGGTCATCTTCTTTAAGTGGGTCATATGGTGATCAGAAAATGGCATATCACAACAATGGATCAGATAATCCAAGGCCACCTCTAAATGCTTATGCTTGTCCTCAGCCAACATATCAGCAGCCACCTTCAATGTACAGCAACAGAGGGCCAGTAGCAAAAAACGAAGCTCCCCCAAGGATCATGCCTATTACTGCTCTGAACCCTTACCAAGGAAGGTGGACAATAAAGGCTCGAGTTACTTCAAAAGGAGAACTTAGACACTACAATAATCCTCGTGGAGATGGGAAAGTGTTTTCATTTGATCTACTTGATGCACACCGTGGAGAAATACGAGTTACGTGTTTCAACATGGTAGCTGACCAGTTTTACAACCAGATTGAACCAGGTAAAGTTTACTTCATTTCTAAAGGAAGCTTGAAACCTGCTCAAAAGAACTTCAACCATCTCAAAAATGACTTTGAAATATTTCTTGAGAGCACATCAACAATCCAACCTTGCTTTGAGGATGACCAATCAATCCCCCAACAGCAGTTCCATTTCCATCAGATTAGTGAGATTGAAGGCATGGACAACAACAGTGTTGTAGATTTAATTGGTGTTGTTACGTCCATTAATCCTTCAACTTCTATAATGAGAAAAAATGGTATCGAGACTCAGAAGAGAACCCTTCAGTTGAAAGATATGTCTGGGCGAAGTGTTGAATTGACTCTTTGGGGAAACTTTTGTCAAGCAGAAGGGCAACGATTGCAAAATATGTGCGACTCAGGGATGTTCCCAGTCTTGGCTGTGAAATCTGGTAGGGTGAGTGACTTCAATGGGAAGGCAGTGGGAACCATTTCATCAAGTCAGCTGTCTGTAGAGCCAGATTTTCCTGAGGCTCGTACTCTGAGAGAGTGGTTTGAGAAGGAAGGGAGGAGTACTCCGTCTGTGTCTATATCGAGGGAAGTTTCTAGCATAGGCAGGACAGATGTCCGTAAGACCATATCTCAAATAAAAGATGAGAGGTTAGGAACATCTGAGAAGCCTGATTGGATTACTGTTAGTGCAACCGTTTCATTTATTAAGGTAGACAACTTCTGTTACACAGCATGTCCTATCATGATCGGGGACCGACAATGCAGCAAAAAGGTTACAAATAATGGAGATGGAAAGTGGAGATGTGACCGGTGTGATCAGTCTGTTGACGAATGTGATTACAGATACATACTCCAGCTGCAAATACAGGATCATACTGGTTTAACTTGGGTAACTGCATTTCAAGAAGGTGGTGAGGAAATCATGGGCGTACCTGCAAAAAGATTGTATTATTTGAAATACGAAGAGCAAGATGATGAGAAATTTGCAGAAATCATCCGTAAGGTTCTTTTTACAAAATTTATCATGAAGCTGAAAATAAAGGAAGAGACTTTTAGTGATGAACAGAGAGTAAGGTCAACAGTGGTGAAAGCAGAAAGCATTAATTTTTCGACTGAGTCCCGATTTCTTCTAGACTTAATGGAAAAGCTCAGGGCAGAGAACGCCAGTTCTGTTACCCCAAAGACAGAAAGCACCATTCATGATCTCGGACTTCGTGGTGCCGGGAATATTGGTGGTGGACAGTTCGTGTCACCCAGTCGAAATATTAGCAATGTTAGCAGCAGAGAATATGGTACACCAAACCTAGGTGTTCAGTATGAGAACCAATACAGCAGTTCTAGGCCTTCTCCATCCATGGTGCATAATTCACACACTTACTGCAACAGCTGCGGGGGCTCTGGTCACAGCTCGATGAACTGCCCAAGTATAACAAGTGCTCCTACGCATCCCATTGGAGGGGGAATGTATTCAAATCGATCTTCTGGCCCTTCCGGTGGTGGTGTCTCTGGGGAATGCTTTAAATGCCATCAAACAGGGCATTGGGCCAGGGATTGCCCTGGTTTGGCTGCTGTCCCTCCAGCTTATGGTAACAGTGGCTTCACGGCTAGGTAA 2562 43.75 MAQFKLTEGAVMMICKRESTAETFQPVVQVIDLKLVNTAQQSGSERYRLLLSDGTHYQQGMLGTQLNGLVKSGKLQKGSIVQLKQYVCNPVQERLIIIVIELDVVVEMCEFIGEPVPATRSVTGAFSGNPQSSVVTSPSSGIAGKMNVSSASSELPKVNQSHASHVGAYSNTPESGRYTASIAPPLYPNKTDPGTRFNGSSSLSGSYGDQKMAYHNNGSDNPRPPLNAYACPQPTYQQPPSMYSNRGPVAKNEAPPRIMPITALNPYQGRWTIKARVTSKGELRHYNNPRGDGKVFSFDLLDAHRGEIRVTCFNMVADQFYNQIEPGKVYFISKGSLKPAQKNFNHLKNDFEIFLESTSTIQPCFEDDQSIPQQQFHFHQISEIEGMDNNSVVDLIGVVTSINPSTSIMRKNGIETQKRTLQLKDMSGRSVELTLWGNFCQAEGQRLQNMCDSGMFPVLAVKSGRVSDFNGKAVGTISSSQLSVEPDFPEARTLREWFEKEGRSTPSVSISREVSSIGRTDVRKTISQIKDERLGTSEKPDWITVSATVSFIKVDNFCYTACPIMIGDRQCSKKVTNNGDGKWRCDRCDQSVDECDYRYILQLQIQDHTGLTWVTAFQEGGEEIMGVPAKRLYYLKYEEQDDEKFAEIIRKVLFTKFIMKLKIKEETFSDEQRVRSTVVKAESINFSTESRFLLDLMEKLRAENASSVTPKTESTIHDLGLRGAGNIGGGQFVSPSRNISNVSSREYGTPNLGVQYENQYSSSRPSPSMVHNSHTYCNSCGGSGHSSMNCPSITSAPTHPIGGGMYSNRSSGPSGGGVSGECFKCHQTGHWARDCPGLAAVPPAYGNSGFTAR 853
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7098340 7103059 - Cp4.1LG08g08950.1 Cpe08g00899 473865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00899 853 CDD RPA1_DBD_A 260 363 - -
Cpe08g00899 853 Pfam Replication factor-A protein 1, N-terminal domain 6 106 IPR007199 GO:0003677|GO:0005634|GO:0006260
Cpe08g00899 853 ProSiteProfiles Zinc finger CCHC-type profile. 777 792 IPR001878 GO:0003676|GO:0008270
Cpe08g00899 853 MobiDBLite consensus disorder prediction 193 223 - -
Cpe08g00899 853 Pfam Replication protein A OB domain 381 484 IPR031657 -
Cpe08g00899 853 Gene3D - 772 840 - -
Cpe08g00899 853 Gene3D - 257 366 IPR012340 -
Cpe08g00899 853 SMART c2hcfinal6 821 837 IPR001878 GO:0003676|GO:0008270
Cpe08g00899 853 SMART c2hcfinal6 776 792 IPR001878 GO:0003676|GO:0008270
Cpe08g00899 853 Gene3D - 4 119 IPR012340 -
Cpe08g00899 853 SUPERFAMILY Retrovirus zinc finger-like domains 808 839 IPR036875 GO:0003676|GO:0008270
Cpe08g00899 853 SUPERFAMILY Nucleic acid-binding proteins 4 113 IPR012340 -
Cpe08g00899 853 PANTHER REPLICATION PROTEIN A SUBUNIT 5 735 - -
Cpe08g00899 853 CDD RPA1_DBD_C 526 699 IPR013955 -
Cpe08g00899 853 CDD RPA1_DBD_B 392 499 - -
Cpe08g00899 853 CDD RPA1N 9 106 IPR007199 GO:0003677|GO:0005634|GO:0006260
Cpe08g00899 853 Gene3D - 509 700 IPR012340 -
Cpe08g00899 853 ProSiteProfiles Zinc finger CCHC-type profile. 822 836 IPR001878 GO:0003676|GO:0008270
Cpe08g00899 853 MobiDBLite consensus disorder prediction 151 243 - -
Cpe08g00899 853 SUPERFAMILY Nucleic acid-binding proteins 376 504 IPR012340 -
Cpe08g00899 853 Pfam Replication factor-A C terminal domain 542 693 IPR013955 -
Cpe08g00899 853 PANTHER REPLICATION FACTOR A 1, RFA1 5 735 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Cpe08g00899 853 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 236 699 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Cpe08g00899 853 Pfam Zinc knuckle 821 836 IPR001878 GO:0003676|GO:0008270
Cpe08g00899 853 Gene3D - 370 508 IPR012340 -
Cpe08g00899 853 SUPERFAMILY Nucleic acid-binding proteins 523 700 IPR012340 -
Cpe08g00899 853 Pfam OB-fold nucleic acid binding domain 271 356 IPR004365 GO:0003676
Cpe08g00899 853 SUPERFAMILY Nucleic acid-binding proteins 257 370 IPR012340 -
Cpe08g00899 853 MobiDBLite consensus disorder prediction 151 178 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g00899 Cpe-Chr8:7098340 Cpe11g01184 Cpe-Chr11:9703803 2.99E-69 dispersed
Cpe04g01458 Cpe-Chr4:11631581 Cpe08g00899 Cpe-Chr8:7098340 1.29E-88 transposed
Cpe14g01003 Cpe-Chr14:8460607 Cpe08g00899 Cpe-Chr8:7098340 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00899 K07466 - csv:101211358 1466.06