Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00911 ATGGAAACCCAATCAGAAGCCGCAGAAGAAAGCATAGCGAGCATCAAAGACAAGCGTCAGCAACTCGAAGCTCGCATTGTAGCCCAACACACGAACCACTTGGAGCTTCTCTCTTCTGTTCAAGCTCAAATTCCTGGTATTGTTTCTTCTCTCGATCTCTCTCTCAAGCTCGTATCCTCCTTCAATGGCCGCTCGTTTACTCCCACACCGGTTCTCCCTGAACCCAAGAACAAACCCTCTAAATACCCTTTGTCGAGTAGTGACGCTATGCTCCATAAATCCCGCCCTAATCTTCTTCCGTCAGGAGAAGCGAAACTCGCGATTCAGAAGAATCGGAATGCGAAGTCGTATCCGGAATTGAATTCCGATCGTAAGCGAGTTCGCCAGCCTGATGGCGGGAAATTTTCGATTGACGATAGTAGAAGCCCTTTGTCGGTTGTGCGGTCGATGGTGGCGGTTTGTTTACTCGAACGGGTTCATTTTACGGCGATTGATTCTTCGACGGTGTTGAGGAAATTGGAGAATGATCAGAAGGCTACGGCGGCGGAGAAGGCGGCGTTGCGGGAATTAGGGGGAGATTCCGGTGCGATATTGGCGGTGGAGATGGCTTTGAGGTCGATGGCGGAGGATAACGGCGGGGTTGAATTGGAGGAGTTTGTTGTGAGTGGGAAGTCTCGAGTGATGGTGTTGGGGATTGATCGTACTCGACTTATGAAGGAATTGCCCGAGAGTGCTGATTTTCAGACGCAGGAATCGAACGCGGGAGAGGGTAATTCCGGTCATAATCAGAACCAGCAAGTGGTGAGTGGTGGTGGTGTGGATGTCAATGGCGGAGTCTTTGGGATGGGAGGGCCAATGCCGAGGCCGATGCCGGAGATGTGGATGGGGCCTGGAGACCCCAATATGCAGGGACTATCACCCATGTTTCCGGGCAGTGGACCTGCAGGGTCAATGGCTGGAGGAAGGGGTGCCCCTAGGATGATGGGAATGATGGGGATGCCTAGAGGGATGGGACTCCCCCCATTGCACAGGCCATTGATGGGGCCAAATGTGCCCATGGGTGGCCCCAATTCAATGCCGCAGAAGCCTAAATCTGAGGAGGATGACATGAACGATCTCGAAGCCTTGTTGAACAAGAAGTCGTTTAGAGAATCACAGAAGTCGAAGACTGGTGAGGAGCTCTTGGACCTAATTCACCGCCCAACTGCCAGGGAAACTGCTGTGGCAGCAAAGTTTAAAACTAAAGGTGGTTCACAACTGAAAGAATACTGCTCATCCTTAACAAAAGAGGACTGTCGGCGTCAATCTGGCTCTTACGTCGCGTGTGAGAAGGTTCATTTTCGACGAATCATTGCCCCACATACTGACATCAATCTTGGTGACTGCTCTTTTCTTGATACCTGTCGGCACATGAAGGTAGAACTTGGTGAATCACAATGGATTAACTGTGACATTCGTAATTTTAGAATGGACATTTTGGGGCAATTTGGAGTGATTATGGCAGATCCACCGTGGGATATCCATATGGAATTGCCTTATGGAACAATGGCTGATGATGAAATGCGCAATCTCAACGTTCCTGCGCTACAGACCGATGGTCTGATTTTTCTTTGGGTCACTGGGCGTGCAATGGAACTTGGAAGAGAATGTTTAGAACAATGGGGCTACAAGCGTGTTGAGGAGCTTATATGGGTTAAGACAAATCAACTTCAAAGAATTATTAGAACAGGGCGGACGGGCCATTGGCTCAATCATAGTAAGGAGCATTGCCTTGTTGGAATAAAGGGAAATCCAGAAGTTAACAGGAATATTGACACAGATGTTGTTGTTGCGGAGGTTCGAGAAACAAGTCGTAAACCGGACGAGATGTACCCTTTGCTTGAGAGGATAAGTCCAAGAACAAGAAAGCTAGAATTGTTTGCTCGCATGCACAACACTCATGCAGGGTGGATATCTCTTGGTAATCAATTGAATGGAGTGAGGTTGGTTGATGAAGGACTAAGAGCAAGGTTCAAGGCTGCATATCCGAACGTCGAGGTCCAGCCAGCGTCCCCTCCAAGGGCTTCCATGGAAACTGATTCTGGGGCTGCCCAACTCAGGAGTCCCTTCGCAGGATCAGAATCAAAGGCAGCTTATGGGAACCCTACTACGATTCCTGAGGTACAATATGCAGTGGCTACCCCAGATAAAGCCATTGCAGTAGGAGTTGACACGGCTAACTGA 2223 49.35 METQSEAAEESIASIKDKRQQLEARIVAQHTNHLELLSSVQAQIPGIVSSLDLSLKLVSSFNGRSFTPTPVLPEPKNKPSKYPLSSSDAMLHKSRPNLLPSGEAKLAIQKNRNAKSYPELNSDRKRVRQPDGGKFSIDDSRSPLSVVRSMVAVCLLERVHFTAIDSSTVLRKLENDQKATAAEKAALRELGGDSGAILAVEMALRSMAEDNGGVELEEFVVSGKSRVMVLGIDRTRLMKELPESADFQTQESNAGEGNSGHNQNQQVVSGGGVDVNGGVFGMGGPMPRPMPEMWMGPGDPNMQGLSPMFPGSGPAGSMAGGRGAPRMMGMMGMPRGMGLPPLHRPLMGPNVPMGGPNSMPQKPKSEEDDMNDLEALLNKKSFRESQKSKTGEELLDLIHRPTARETAVAAKFKTKGGSQLKEYCSSLTKEDCRRQSGSYVACEKVHFRRIIAPHTDINLGDCSFLDTCRHMKVELGESQWINCDIRNFRMDILGQFGVIMADPPWDIHMELPYGTMADDEMRNLNVPALQTDGLIFLWVTGRAMELGRECLEQWGYKRVEELIWVKTNQLQRIIRTGRTGHWLNHSKEHCLVGIKGNPEVNRNIDTDVVVAEVRETSRKPDEMYPLLERISPRTRKLELFARMHNTHAGWISLGNQLNGVRLVDEGLRARFKAAYPNVEVQPASPPRASMETDSGAAQLRSPFAGSESKAAYGNPTTIPEVQYAVATPDKAIAVGVDTAN 740
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7172714 7178693 + Cp4.1LG08g09010.1 Cpe08g00911 473877

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00911 740 MobiDBLite consensus disorder prediction 246 270 - -
Cpe08g00911 740 MobiDBLite consensus disorder prediction 66 97 - -
Cpe08g00911 740 PANTHER N6-ADENOSINE-METHYLTRANSFERASE 1 472 - -
Cpe08g00911 740 PANTHER N6-ADENOSINE-METHYLTRANSFERASE 473 690 - -
Cpe08g00911 740 MobiDBLite consensus disorder prediction 117 135 - -
Cpe08g00911 740 Coils Coil 5 25 - -
Cpe08g00911 740 Coils Coil 170 190 - -
Cpe08g00911 740 PANTHER N6-ADENOSINE-METHYLTRANSFERASE CATALYTIC SUBUNIT 473 690 - -
Cpe08g00911 740 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 476 636 IPR029063 -
Cpe08g00911 740 ProSiteProfiles MT-A70-like family profile. 458 676 IPR007757 -
Cpe08g00911 740 Pfam MT-A70 496 656 IPR007757 -
Cpe08g00911 740 MobiDBLite consensus disorder prediction 110 139 - -
Cpe08g00911 740 PANTHER N6-ADENOSINE-METHYLTRANSFERASE CATALYTIC SUBUNIT 1 472 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00911 K05925 METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348] - csv:101210377 1208.74
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00313 Cpe-Chr1:1794447 Cpe08g00911 Cpe-Chr8:7172714 5.06E-35 dispersed
Cpe08g00911 Cpe-Chr8:7172714 Cpe14g00180 Cpe-Chr14:1004888 5.60E-35 dispersed
Cpe08g00911 Cpe-Chr8:7172714 Cpe14g01012 Cpe-Chr14:8525085 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g223 . . . . . . . Bma14g00107 Cmo06g00594 Cmo16g01270 . . . . . . . . . . . . . . Cla10g00089 Cam10g0089 Cec10g0093 Cco10g0095 Clacu10g0090 Cmu10g0937 Cre10g0351 . . . . Lsi07g01118 . . Cme06g02398 Blo03g00810 . Bda07g00146 . . . . . . . . Cma06g00592 Cma16g01226 Car06g00522 Car16g01154 Cpe08g00911 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009638 1 0 1 1 0 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe08g00911 Cpe_Chr08 FPKM 9.996479 12.659574 19.645643 19.399021 23.726913 22.674931 22.498016 30.897566 34.948196 32.13966