Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00912 ATGGCGATTCTTGAGAGCTTTCTTAGATTTAGGTTTCTTCAGCATGTTGTGATTTTGTTGCAGATCCATAGTGTAATCTGCTATCAGTACAAAGTTGGAGATTTGGATTCTTGGGGTCTTCCCACTTCTGAAAATCCAAAGATCTATATGTATTGGTCTAAATATCACTCTTTACAGATTGGTGATTCTCTGATGTTCTTGTATCCACCAAGCCAAGATTCAGTGATTCAAGTTACAAAGGAATCTTACAACAGCTGCAATCTCAAGAATCCAATCTTGTCCATGAAAGATGGTAACTCTGTTTTCAATATCACTACTTATGGGGATCTGTTCTTCACCAGTGGAGTTGCAGGCCACTGTGAGAAGAATCAGAAGCTTCATATCTCTGTGCTTTCTGGAAATGGTTCTTCTGCAAGCGCTCCATCTTCTGATGGTGCACTTCCTGAAATCTCTCCCTCTTACCCCACTGTTTTTGGTGGAATCCCAGCAGCTCCCATGGCCAACTCCAGCTCCTCCTCCTCTTCTTCCTCTTTGTCAACAAAAATCTCATTTTTTCCTGCCTTGGTTGCTGCTGCTTTTGCTGGGCTTTTGATTCTGAGCCAATGA 606 42.08 MAILESFLRFRFLQHVVILLQIHSVICYQYKVGDLDSWGLPTSENPKIYMYWSKYHSLQIGDSLMFLYPPSQDSVIQVTKESYNSCNLKNPILSMKDGNSVFNITTYGDLFFTSGVAGHCEKNQKLHISVLSGNGSSASAPSSDGALPEISPSYPTVFGGIPAAPMANSSSSSSSSSLSTKISFFPALVAAAFAGLLILSQ 201
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7178886 7181760 - Cp4.1LG08g09060.1 Cpe08g00912 473878

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00912 201 SUPERFAMILY Cupredoxins 27 131 IPR008972 -
Cpe08g00912 201 PANTHER MAVICYANIN 11 192 - -
Cpe08g00912 201 PANTHER BLUE COPPER PROTEIN 11 192 IPR039391 GO:0009055
Cpe08g00912 201 CDD OsENODL1_like 28 131 IPR041846 -
Cpe08g00912 201 Pfam Plastocyanin-like domain 47 123 IPR003245 GO:0009055
Cpe08g00912 201 ProSiteProfiles Phytocyanin domain profile. 28 132 IPR003245 GO:0009055
Cpe08g00912 201 Gene3D - 28 143 IPR008972 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00912 - - - cpep:111800890 378.637
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g00912 Cpe-Chr8:7178886 Cpe12g00665 Cpe-Chr12:6443138 9.60E-24 dispersed
Cpe14g00475 Cpe-Chr14:2990889 Cpe08g00912 Cpe-Chr8:7178886 2.38E-12 dispersed
Cpe08g00912 Cpe-Chr8:7178886 Cpe17g00141 Cpe-Chr17:880581 1.94E-21 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g224 . . . . . . Bma07g01016 . Cmo06g00593 . . . . . . . . . . . . . . . Cla10g00088 Cam10g0088 Cec10g0092 Cco10g0094 Clacu10g0089 Cmu10g0936 Cre10g0350 Cone8ag0534 . . . Lsi07g01117 . . Cme06g02397 . Blo19g00144 . . Bpe08g00893 . . . . . . Cma06g00591 . . . Cpe08g00912 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014226 0 0 1 1 0 1 1 1 1 1 0 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 0 1 1 1 23
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe08g00912 Cpe_Chr08 FPKM 3.734959 4.72148 25.903782 27.49453 125.877312 152.01506 118.17997 29.034143 26.402016 28.007109