Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00913 ATGGGAAGGATGGGAGGTCGGCAAAGGACTTACAGCGCCAATTCCACCGATTATAAGCTTCTTGAAGAGATTGGTTATGGTGCTAGTGCCACGGTTTTTCGAGCGATCTATACTCCGTCCAATGAAGTTGTTGCCATTAAGTGTTTGGATCTTGATCGCTGTAATAGTAATCTAGATGATATACGTAGGGAGGCTCAAACAATGAGTTTGATAGATCATCCAAACCTCGTAAGGGCTTATTGTTCATTTGTTGTTGACCGAAACCTTTGGGTTGTCATGCCATTCATGGCAGAGGGTTCTTGTTTGCACCTAATTAAGACAGCATACTCAGATGGCTTTGAAGAGGTTGCTATTGGTTCTGTCCTGAAAGAAACTCTTAAAGCCTTGGAGTACCTTCATCGACAAGGACACATACATCGGGATGTGAAGGCTGGAAATATACTACTCGATGGTAATGGGGCTGTGAAGCTTGCTGATTTTGGTGTTTCAGCTTGCATGTTTGATACAGGTGATAGACAGCGCTCCAGAAATACCTTTGTGGGAACCCCATGCTGGATGGCGCCCGAGGTATTGCAACCAGGAACGGGATATAATTCCAAGGCCGATATTTGGTCTTTTGGTATTACAGCATTGGAGTTGGCTCATGGTCATGCACCATTTTCAAAATATCCTCCAATGAAGGTGCTTCTTATGACCATACAAAATGCTCCTCCTGGGCTGGATTATGATAGGGATAAAAAGTTCTCTAAGTCTTTTAAAGAAATGGTTGCAATGTGCCTGGTGAAAGATCAATCCAAGAGGCCAACAGCTGAGAAACTTTTAAAGCACTCCTTTTTCAAGAATGCTAAGCCTCCAGAGCTTTCTTTGAAGAAATTATTTGCTGACTTGCCTCCTCTTTCACTTCGTGTGAAGGACCTGCTGCTTAAAGATGCTGCCCAGCTAGCCTTAAAGAAAATGCCTTCAGCAGAGCAAGAAGCATTATCACAGAGTGAGTACCAGCGAGGAGTTAGCGCATGGAAATTTGATGTTGAGGATTTGAAAGCCCAAGCTTCCCTGGTGAATGATGATATGGAAGAGATGATGGACGAGGAGGAGAATATAAATACTTGTCATGTTAAGGATGCCTTTTGTTCTCAATCTAGTTTGAGGAATTTCAGTTCATGTAATGAATCATCTCAGGATGAACATGGAGTAGGGGCAAGTGGTCAGGGGTTGCCAAAAGCGGAGTGCTTGAACAAAAAGGGAAACTTTATGGAAGGTGATATGCTGAAAGCTGGGTTCCAAGAAACAACTGGATGGAAGAGAAATGGAACTAGCACTGAAGCAGAAGCTTCTACATCTGGCCAAGACAGTGTACAAGGAAAAACCAAAACCCAAATGCCAAAAGGTCGTCAAACTCAAAGTGGTCCACTTCTACCTGGTACTGTGCTTAGTCATTCTTTATCAGAAAGAGTGCGAGGATCTGATAGGAGTGATGTTTATGCACTCCTGTTTGAATCTGAAATTCAACCATCTACTGAAAAAAATCGTCGAGAAGCACGGCAAGCTCCAAGCTTCAGTGGTCCACTAATGCTGCCAAACCGTGCCTCAGCAAACAGCCTATCAGCTCCCATAAAACCTTCTGGAGGGTATAGAGATTCAATGGATGACAAATCAAAAGCTAATCTTGTGCAAATTAAGGGGCGTTTTTCAGTGACGTCAGAGAACCTAGATCTCGTAAAGGATATTCCATTGAGCACGGTTTCACGACGGTCTGCACAGAACTCACCTCTACGAAAGTCGGCTAGTGTTGGTGATTGGATATTTGATTCCAAGCAGGTTTGGATAATGTCCCTGCTTGCTTCGTCTCCATATGATTACTGTAATGCAAAATCTGTCAGCCAACCCCCCAAGGAGGCTTGCAACATCAACATGCCCACATCAATTCTTATGCCTCATCTTCAGAATCTTTTCCATCAGACCTCAATTCAACAGGATCTTATAGTGAACTTATTGAATAGCTTACAAACAGCAGACGTGGTTGATGCTACTCAAAATGGAAAGTTGCCTCCATTACCTCGAAGTTTGGAGAATAATGGAAGTGCCGAAACAGCAGCGGTTGAGAGAGAGCGTTTACTGATGCGTAAAGTCTCTGAACTTCAAGCTAGAATGACGCATTTGACTTATGAGTTGACTTCTGAAAAGTTGAAATACATACAATTACAAGAGCAGTTCAACTCAGCATCTGGTCAGGAAGAAAACGAGATCAAGAGGGAAGAGAACGTCTGA 2268 43.17 MGRMGGRQRTYSANSTDYKLLEEIGYGASATVFRAIYTPSNEVVAIKCLDLDRCNSNLDDIRREAQTMSLIDHPNLVRAYCSFVVDRNLWVVMPFMAEGSCLHLIKTAYSDGFEEVAIGSVLKETLKALEYLHRQGHIHRDVKAGNILLDGNGAVKLADFGVSACMFDTGDRQRSRNTFVGTPCWMAPEVLQPGTGYNSKADIWSFGITALELAHGHAPFSKYPPMKVLLMTIQNAPPGLDYDRDKKFSKSFKEMVAMCLVKDQSKRPTAEKLLKHSFFKNAKPPELSLKKLFADLPPLSLRVKDLLLKDAAQLALKKMPSAEQEALSQSEYQRGVSAWKFDVEDLKAQASLVNDDMEEMMDEEENINTCHVKDAFCSQSSLRNFSSCNESSQDEHGVGASGQGLPKAECLNKKGNFMEGDMLKAGFQETTGWKRNGTSTEAEASTSGQDSVQGKTKTQMPKGRQTQSGPLLPGTVLSHSLSERVRGSDRSDVYALLFESEIQPSTEKNRREARQAPSFSGPLMLPNRASANSLSAPIKPSGGYRDSMDDKSKANLVQIKGRFSVTSENLDLVKDIPLSTVSRRSAQNSPLRKSASVGDWIFDSKQVWIMSLLASSPYDYCNAKSVSQPPKEACNINMPTSILMPHLQNLFHQTSIQQDLIVNLLNSLQTADVVDATQNGKLPPLPRSLENNGSAETAAVERERLLMRKVSELQARMTHLTYELTSEKLKYIQLQEQFNSASGQEENEIKREENV 755
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7182865 7195360 - Cp4.1LG08g09110.1 Cpe08g00913 473879

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00913 755 CDD STKc_OSR1_SPAK 17 279 - -
Cpe08g00913 755 Gene3D Transferase(Phosphotransferase) domain 1 99 307 - -
Cpe08g00913 755 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 3 747 - -
Cpe08g00913 755 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 3 747 - -
Cpe08g00913 755 Coils Coil 343 363 - -
Cpe08g00913 755 Gene3D Phosphorylase Kinase; domain 1 7 95 - -
Cpe08g00913 755 MobiDBLite consensus disorder prediction 431 475 - -
Cpe08g00913 755 ProSiteProfiles Protein kinase domain profile. 18 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe08g00913 755 SUPERFAMILY Protein kinase-like (PK-like) 17 333 IPR011009 -
Cpe08g00913 755 Pfam Protein kinase domain 18 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe08g00913 755 MobiDBLite consensus disorder prediction 504 549 - -
Cpe08g00913 755 SMART serkin_6 18 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe08g00913 755 MobiDBLite consensus disorder prediction 430 475 - -
Cpe08g00913 755 ProSitePatterns Protein kinases ATP-binding region signature. 24 47 IPR017441 GO:0005524
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00913 - - - csv:101213683 1315.44
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe08g00913 Cpe14g01014 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02349 Cpe-Chr1:19680058 Cpe08g00913 Cpe-Chr8:7182865 2.35E-07 dispersed
Cpe06g00678 Cpe-Chr6:4198781 Cpe08g00913 Cpe-Chr8:7182865 5.92E-70 dispersed
Cpe08g00913 Cpe-Chr8:7182865 Cpe13g00900 Cpe-Chr13:7689434 5.02E-147 dispersed
Cpe03g01498 Cpe-Chr3:11812109 Cpe08g00913 Cpe-Chr8:7182865 1.57E-106 transposed
Cpe14g01014 Cpe-Chr14:8545214 Cpe08g00913 Cpe-Chr8:7182865 1.34E-155 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g230 . . . . . . . . Cmo06g00592 Cmo16g01271 . . . . . Cpe14g01014 . . . . . . . . . . . . . . . Cone8ag0549 Cone12ag0550 . . Lsi07g01113 . . Cme06g02394 . . . . . . . Bma12g00255 . . . Cma06g00589 Cma16g01228 Car06g00521 Car16g01156 Cpe08g00913 . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe06g00678 CST 1 711 MAP Kinase Kinase Kinase Kinase AT1G53165 59.1 1.4e-213 740.0
Cpe02g00695 CST 1 656 MAP Kinase Kinase Kinase Kinase AT1G53165 53.8 6.5e-187 651.4
Cpe06g00678 CST 1 710 MAP Kinase Kinase Kinase Kinase AT3G15220 60.9 2.0e-220 762.7
Cpe02g00695 CST 1 655 MAP Kinase Kinase Kinase Kinase AT3G15220 55.3 3.4e-191 665.6
Cpe09g00224 . 268 533 MAP Kinase Kinase Kinase Kinase AT3G15220 50.9 1.4e-67 255.0
Cpe09g00224 . 4 857 MAP Kinase Kinase Kinase Kinase AT1G69220 57.9 9.2e-241 830.5
Cpe06g00678 CST 23 268 MAP Kinase Kinase Kinase Kinase AT1G69220 52.6 9.4e-68 255.8
Cpe13g00900 CCT,ECH 1 623 MAP Kinase Kinase Kinase Kinase AT5G14720 59.7 2.9e-216 748.8
Cpe01g02349 CCT,ECH 1 623 MAP Kinase Kinase Kinase Kinase AT5G14720 58.0 6.3e-211 731.1
Cpe08g00913 CCT 7 745 MAP Kinase Kinase Kinase Kinase AT4G24100 62.3 2.4e-240 828.9
Cpe14g01014 CCT 7 844 MAP Kinase Kinase Kinase Kinase AT4G24100 51.9 1.2e-210 730.3
Cpe08g00913 CCT 11 746 MAP Kinase Kinase Kinase Kinase AT4G10730 62.0 4.8e-238 821.2
Cpe14g01014 CCT 11 844 MAP Kinase Kinase Kinase Kinase AT4G10730 52.4 6.3e-214 741.1
Cpe08g00913 CCT 5 364 MAP Kinase Kinase Kinase Kinase AT1G70430 57.5 1.4e-116 417.5
Cpe14g01014 CCT 226 507 MAP Kinase Kinase Kinase Kinase AT1G70430 59.4 1.0e-95 348.2
Cpe13g00900 CCT,ECH 1 249 MAP Kinase Kinase Kinase Kinase AT1G23700 61.9 6.4e-80 295.4
Cpe01g02349 CCT,ECH 6 249 MAP Kinase Kinase Kinase Kinase AT1G23700 61.9 3.0e-77 286.6
Cpe08g00913 CCT 17 306 MAP Kinase Kinase Kinase Kinase AT1G23700 50.9 8.9e-74 275.0
Cpe03g01498 . 32 509 MAP Kinase Kinase Kinase Kinase AT4G14480 57.1 2.8e-144 509.2
Cpe13g00900 CCT,ECH 5 249 MAP Kinase Kinase Kinase Kinase AT4G14480 50.4 8.7e-69 258.5
Cpe01g02349 CCT,ECH 5 249 MAP Kinase Kinase Kinase Kinase AT4G14480 50.4 1.4e-66 251.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005064 3 0 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 2 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62559 PF00069 Pkinase 7.40E-61 CL0016 Cpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe08g00913 Cpe_Chr08 FPKM 14.525401 15.921932 44.619312 46.160328 39.026871 43.831234 38.666519 27.535542 26.459839 27.01055