Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00954 ATGTCCCGATTATCCGCCACCACCCGTTTCTCGCTCCTCTTCTTCTCCAACTTCAACCTCAACCTCAACCTCAACCCCACCCGTTTTCTCTCTCTATTCAACCCTTCTCGCCTCTCTTTCTCCACTCTCCATCTCTGCAAGTCCCTCGCTCGCCTTCTTGCCTCCAAAACCCTAGCCCTTTTCACCATGGACGATCTCTTCCCCAATGACGATGATTTCTGGGACCTCGATGTGGGTTCCCGTTCCCGCCCCCCACAGCGCCCCCGCCTCCTTGATGACTACGATTATGACGATAATGATCCCGAAAAGGTCTACTTTGTTCCCTTCAGGTGGCTGCAGGAAACTCAAAATGATAGCGATCAAGTAGTAGGTGTTTTATATAGTGTGTCATCAGATGAAGATGCTGATTCAGGAATTCTTTTGGAGCTGAGGAAACAAGAAGTTTACACAAAATATGATGGTGTTGAAGAGAGGTCTTCTGGTCGTGAATACGCCTTGATTGGGGAAGCTTTGTGGTTGCAGGCTCTAAAGCGGCATAGTGACGTTAAAACAACATCAAATTATGCTGGCCGACTCTTCAGAGATGAAGAAACGTTGCAGGATGTTTTTCCTTTGCAAATTAGGATCTTGGTATCATGGGAGACAAATTTGTTAGCTGTGAAGATAAATCGAAAGGATAACTTAGCCGACTATTATAAGAGAGCTTCCATTATTTTCAATTCTAGCTCTGAACCGTTTCACATTTGGGACTTCTCAGGGCAAACAAATCATCTTTTCGCAAATAATATGAACAATTTTCTTGATGATTCTCCTGTTCAACGAGTTAAAGAGGCAAGTATATCTGTCCGACTTGAGTTGCAAGTCCATGATGTTTTGGACAATATGATGGATAGATATGAGAAGGTTGCTAATCTAACTGAAGAGCTAAAGACTGAGGAGTCCCCCATTATCATAAATGGGATTATGGATAACGCGAAATCTTATTTGACTGAATCCAACCCTATGATACGTGGAAACAGTTTCAGGGTAGCCAGTTCCATGGGTTTGACAGGATTACAGAATCTTGGGAATACTTGCTTCATGAATAGTGCTCTTCAGTGTTTGGTGCATACTCCAAAACTTGTTGATTATTTCCTTGGAAATTTTCAAAAGGAGATCAATTATGAAAACCCTTTGGGGATGAAAGGAGAGCTTGCTTTAGCATTTGGAGACTTGCTCAGGAAACTATGGGCCCCTGGCTCAAAATCAGTGCCTCCAAGAATGTTTAAACTTAAACTTTCTAATTTTGCTCCCCAATTCAGTGGTTATAATCAGCATGATTCCCAGGAATTTCTTGCCTTTTTGTTGGATGGCCTTCATGAAGATCTAAATCGCGTTAAATGCAAGCCATATTTTGAAGCTAAGGATGTAGAGGGCCGCCGTGACGAAGAAGTAGCTGAAGAATGTTGGCAAAATCATATTGCCCGTAATGATTCTATTATAGTCGATTTGTGCCAGGGTCAGTTTCGGTCAACATTGGCGTGCCCTGCTTGCAATAAGTTATCAGTTACATTTGATCCATTCATGTACCTATCTCTGCCATTGCCCTCGACATCAGTGCGTAGTATGACCCTGAGGGTCTTTACATGTGATGGGATTACATTGCCATCTACGTTTACCCTATCAGTGCCAAAGTCTGGAAGATTGAAAGATCTTATTGATGCCTTAAGCACTGCTTGTTCTTTGAGAGAGGATGAGACCCTGTTGGTAGCTGAGGTATACAAGAATCGCATCTTCCGTCTTCTGGAGGATCCATCTGATTCGCTAGCATTGATTAGGAACGAAGACAAGCTTGTTGCTTACAGGTTACCAAGAGATAGTGAACCATCCAAGTTGATTGTTTACGTGCATCAGAAATCTGAAACGCATGATAATTCAGGAAAGCTAATTTTAGGCTCAAAAACATTTGGAGTCCCATTTGTAGCAAGAGTGCCTGACTTTTGTCGTGAATCAGATATTCGTCAGCAGTTCCTCAAGTTTCTTGATCCGTTAAAAATGCCTGAAGATGATACGCTTAGGAACTGTGATGGCGAAGCTGGTATTTCTGGTAATGATGACTTTGAGATGGATGATGCCTCGGGCCCGAAAAACTTGGATACTGATGAGAGACCAAACAATGGAAATATTGTGAACTCTAGTTTGCCTTCTGATTTCGTATTCTATTTGGCTGAATCACGGGGAGCTTCTGAAGGTACCCTGATTAATCCGGATGAACCTTTAGTCATCTCTGAGTTCACTGAGAGGTTGGATGTTCTCGTCATGTGGCCAGACACGATGATTAATAAATATGATACATGTCTAATGAGTTCACTGCCCGATGTTTTCAAACCACATTTTCTTGCAAGGAGACCTCAAGAGTTTGTCGATTTGTATAAGTGCCTTGAAGCTTTCTTGAAGGAGGAGCCTTTAGGACCCGACGATATGTGGTATTGTCCTAGATGCAAGAAACCTCAGCAAGCTAGAAAAAAGTTGGATCTCTGGAGGTTGCCTGAGATTCTTGTCATTCATCTCAAAAGGTTTTCGTATAGCCGATTTTTGAAGAACAAGCTGGAAACAGTTGTTGATTTCCCAATAGAAGACCTGGATTTTTCAAATTACATCGCTTTCAAGAATAGCCATCTGAGCAATCGTTACATGTTATATGCTGTTAGTAATCACTACGGAGGGATGGGCGCAGGTCACTATACTGCTCATGTTCTTCATGGTGGTAAATGGTATGAGTTCGACGACGATCGAGTTCTCCCTGTGAGCGAAGATGTTGTAAAGTCATCTGCTGCTTATGTTTTATTCTACAGAAGAATTCCAGAAGTATAA 2853 42.31 MSRLSATTRFSLLFFSNFNLNLNLNPTRFLSLFNPSRLSFSTLHLCKSLARLLASKTLALFTMDDLFPNDDDFWDLDVGSRSRPPQRPRLLDDYDYDDNDPEKVYFVPFRWLQETQNDSDQVVGVLYSVSSDEDADSGILLELRKQEVYTKYDGVEERSSGREYALIGEALWLQALKRHSDVKTTSNYAGRLFRDEETLQDVFPLQIRILVSWETNLLAVKINRKDNLADYYKRASIIFNSSSEPFHIWDFSGQTNHLFANNMNNFLDDSPVQRVKEASISVRLELQVHDVLDNMMDRYEKVANLTEELKTEESPIIINGIMDNAKSYLTESNPMIRGNSFRVASSMGLTGLQNLGNTCFMNSALQCLVHTPKLVDYFLGNFQKEINYENPLGMKGELALAFGDLLRKLWAPGSKSVPPRMFKLKLSNFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYFEAKDVEGRRDEEVAEECWQNHIARNDSIIVDLCQGQFRSTLACPACNKLSVTFDPFMYLSLPLPSTSVRSMTLRVFTCDGITLPSTFTLSVPKSGRLKDLIDALSTACSLREDETLLVAEVYKNRIFRLLEDPSDSLALIRNEDKLVAYRLPRDSEPSKLIVYVHQKSETHDNSGKLILGSKTFGVPFVARVPDFCRESDIRQQFLKFLDPLKMPEDDTLRNCDGEAGISGNDDFEMDDASGPKNLDTDERPNNGNIVNSSLPSDFVFYLAESRGASEGTLINPDEPLVISEFTERLDVLVMWPDTMINKYDTCLMSSLPDVFKPHFLARRPQEFVDLYKCLEAFLKEEPLGPDDMWYCPRCKKPQQARKKLDLWRLPEILVIHLKRFSYSRFLKNKLETVVDFPIEDLDFSNYIAFKNSHLSNRYMLYAVSNHYGGMGAGHYTAHVLHGGKWYEFDDDRVLPVSEDVVKSSAAYVLFYRRIPEV 950
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7491564 7501935 - Cp4.1LG08g09530.1 Cpe08g00954 473920

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00954 950 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 70 948 - -
Cpe08g00954 950 SUPERFAMILY Cysteine proteinases 348 946 IPR038765 -
Cpe08g00954 950 Gene3D Cysteine proteinases 771 949 - -
Cpe08g00954 950 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 70 948 - -
Cpe08g00954 950 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 350 947 IPR028889 -
Cpe08g00954 950 MobiDBLite consensus disorder prediction 684 723 - -
Cpe08g00954 950 CDD Peptidase_C19R 776 945 - -
Cpe08g00954 950 Pfam Ubiquitin carboxyl-terminal hydrolase 350 944 IPR001394 GO:0004843|GO:0016579
Cpe08g00954 950 Gene3D Cysteine proteinases 338 583 - -
Cpe08g00954 950 Coils Coil 292 312 - -
Cpe08g00954 950 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 351 366 IPR018200 GO:0004843|GO:0006511
Cpe08g00954 950 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 891 908 IPR018200 GO:0004843|GO:0006511
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00954 - - K21343 csv:101210657 1562.36
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe05g00767 Cpe08g00954 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00454 Cpe-Chr5:2620124 Cpe08g00954 Cpe-Chr8:7491564 0 dispersed
Cpe05g00767 Cpe-Chr5:4748206 Cpe08g00954 Cpe-Chr8:7491564 0 dispersed
Cpe08g00954 Cpe-Chr8:7491564 Cpe11g01046 Cpe-Chr11:8768403 1.16E-16 dispersed
Cpe16g00058 Cpe-Chr16:818208 Cpe08g00954 Cpe-Chr8:7491564 4.11E-11 transposed
Cpe16g00830 Cpe-Chr16:7983282 Cpe08g00954 Cpe-Chr8:7491564 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g257 . . . Bda08g00751 Bpe05g00390 . . . Cmo06g00541 . Cma02g00946 Cma15g01323 Car02g00695 Car15g01188 . . Cpe05g00767 . . . . . . . . . . . . . . . . . . . Csa05g00158 Chy09g01340 . . . . . . . Bma05g00539 Bma12g00420 . Cmo02g00955 Cmo15g01386 Cma06g00538 . Car06g00476 . Cpe08g00954 . Bhi12g00079 . . . . . Lcy12g1510 Cla01g00140 Cam01g0145 . . Clacu01g0140 Cmu01g0140 Cre09g2366 Lsi09g00131 . . Cme09g01887
Vvi8g214 . . . . . . . . Cmo06g00541 . . . . . . . Cpe08g00954 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla10g01728 Cam10g1778 Cec10g1827 Cco10g1801 Clacu10g1795 Cmu10g2545 Cre10g1930 . . . .
Vvi8g215 . . . . Bpe04g01484 Bpe03g01185 Bma04g01533 Bma10g00136 . . . . . . . . Cpe08g00954 . . . . . . . . . . . . . . . . . . . . . . Blo07g01212 Blo09g00461 Bda03g01622 Bda05g01122 . . . . . . . Cma06g00538 . Car06g00476 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008776 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 2 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe08g00954 Cpe_Chr08 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0