Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00962 ATGAACGATTTGTTCTCCTCTCGCTCTTTCTCTCGCGACAGCCATGTCGTTGAGATGGGTATCTCCTCCTCTTCCCCTACTGCTGCTAATCTCGACAAGTTCTTTGAAGACGTTGAATCTGTGAAAGATGAACTCAAGGAGCTTGAGAAACTCTACCAGAACCTCTACGACTCCCATGAACAGAGTAAGACGCTTCACAATGCTAAGGCTGTTAAGGACCTCCGATCTCGCATGGATTCTGATGTTTCCCTTGCTCTCAAGAAGGCTAAGCTCATTAAGGTCCGATTAGAGGCGCTTGATCGCTCCAATGCCTCCAATCGGACCCAACCTGGCTGCGGCCCTGGATCGTCCTCTGACCGGACTCGGACTTCTGTGCTCAGTGGGTTGAGGAAGAAATTGCAGGATTCGATGGAGGGGTTCAATAATTTGAGGCAACAAATCTCTTCTGAGTATAGGGAGACCGTGCAGCGAAGGTATTTCACTGTTACTGGTGAAAATCCGGATGAGAAAACCATTGATATCTTGATATCTACAGGGGAAAGCGAGACATTCTTGCAGAAAGCCATTCAAGAACAAGGAAGAGGCAGAATCTTAGACACCATTAGCGAGATCCAGGAGAGGCATGATGCAGTGAAAGACCTGGAAAGGAATCTGCAGGAGCTGCATCAGGTTTTCATGGACATGGCGGTCTTGGTACACGAACAAGGCGAAAAACTCGACGACATCGAGAGCCATGTGAACAGAGCTCATTCTTTTGTTCGTGGTGGCACACAGGAGTTGTCAAAAGCAAGAGTATACCAGAAAAGCACTCGTAAATGGACGATTATTGGCATTATCATTTTGCTGATCGTTGCCTTGATTATTATCCTCAGCCTGCGCCCTTGGACTTGGAATGGTGGTAATAGTAGTGGCTCTACTCCAGCCCCTTCAACTCCAACCCCCTCAGCCCCAACTCCTCCAGCCACTTGA 969 48.19 MNDLFSSRSFSRDSHVVEMGISSSSPTAANLDKFFEDVESVKDELKELEKLYQNLYDSHEQSKTLHNAKAVKDLRSRMDSDVSLALKKAKLIKVRLEALDRSNASNRTQPGCGPGSSSDRTRTSVLSGLRKKLQDSMEGFNNLRQQISSEYRETVQRRYFTVTGENPDEKTIDILISTGESETFLQKAIQEQGRGRILDTISEIQERHDAVKDLERNLQELHQVFMDMAVLVHEQGEKLDDIESHVNRAHSFVRGGTQELSKARVYQKSTRKWTIIGIIILLIVALIIILSLRPWTWNGGNSSGSTPAPSTPTPSAPTPPAT 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7547582 7549705 - Cp4.1LG08g09630.1 Cpe08g00962 473928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00962 322 PANTHER SYNTAXIN 9 300 IPR045242 -
Cpe08g00962 322 MobiDBLite consensus disorder prediction 102 124 - -
Cpe08g00962 322 Pfam SNARE domain 237 289 IPR000727 -
Cpe08g00962 322 SMART SynN_4 26 152 IPR006011 GO:0016020
Cpe08g00962 322 MobiDBLite consensus disorder prediction 301 322 - -
Cpe08g00962 322 Gene3D - 28 161 - -
Cpe08g00962 322 Gene3D - 198 293 - -
Cpe08g00962 322 PANTHER SYNTAXIN OF PLANTS 122 PROTEIN 9 300 - -
Cpe08g00962 322 Coils Coil 31 58 - -
Cpe08g00962 322 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 201 263 IPR000727 -
Cpe08g00962 322 SUPERFAMILY t-snare proteins 30 256 IPR010989 GO:0016020|GO:0016192
Cpe08g00962 322 Coils Coil 204 224 - -
Cpe08g00962 322 ProSitePatterns Syntaxin / epimorphin family signature. 207 246 IPR006012 GO:0005484|GO:0006886|GO:0016020
Cpe08g00962 322 CDD SNARE_syntaxin1-like 200 262 - -
Cpe08g00962 322 SMART tSNARE_6 196 263 IPR000727 -
Cpe08g00962 322 Pfam Syntaxin 33 236 IPR006011 GO:0016020
Cpe08g00962 322 CDD SynN 31 188 IPR006011 GO:0016020
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe08g00962 Cpe10g01038 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g00962 Cpe-Chr8:7547582 Cpe20g00409 Cpe-Chr20:2339171 9.28E-121 dispersed
Cpe14g00975 Cpe-Chr14:8249458 Cpe08g00962 Cpe-Chr8:7547582 1.63E-09 dispersed
Cpe19g00503 Cpe-Chr19:4303812 Cpe08g00962 Cpe-Chr8:7547582 3.12E-134 wgd
Cpe03g00316 Cpe-Chr3:1660184 Cpe08g00962 Cpe-Chr8:7547582 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00962 K08486 - csv:101208931 503.056