Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe08g00962 | ATGAACGATTTGTTCTCCTCTCGCTCTTTCTCTCGCGACAGCCATGTCGTTGAGATGGGTATCTCCTCCTCTTCCCCTACTGCTGCTAATCTCGACAAGTTCTTTGAAGACGTTGAATCTGTGAAAGATGAACTCAAGGAGCTTGAGAAACTCTACCAGAACCTCTACGACTCCCATGAACAGAGTAAGACGCTTCACAATGCTAAGGCTGTTAAGGACCTCCGATCTCGCATGGATTCTGATGTTTCCCTTGCTCTCAAGAAGGCTAAGCTCATTAAGGTCCGATTAGAGGCGCTTGATCGCTCCAATGCCTCCAATCGGACCCAACCTGGCTGCGGCCCTGGATCGTCCTCTGACCGGACTCGGACTTCTGTGCTCAGTGGGTTGAGGAAGAAATTGCAGGATTCGATGGAGGGGTTCAATAATTTGAGGCAACAAATCTCTTCTGAGTATAGGGAGACCGTGCAGCGAAGGTATTTCACTGTTACTGGTGAAAATCCGGATGAGAAAACCATTGATATCTTGATATCTACAGGGGAAAGCGAGACATTCTTGCAGAAAGCCATTCAAGAACAAGGAAGAGGCAGAATCTTAGACACCATTAGCGAGATCCAGGAGAGGCATGATGCAGTGAAAGACCTGGAAAGGAATCTGCAGGAGCTGCATCAGGTTTTCATGGACATGGCGGTCTTGGTACACGAACAAGGCGAAAAACTCGACGACATCGAGAGCCATGTGAACAGAGCTCATTCTTTTGTTCGTGGTGGCACACAGGAGTTGTCAAAAGCAAGAGTATACCAGAAAAGCACTCGTAAATGGACGATTATTGGCATTATCATTTTGCTGATCGTTGCCTTGATTATTATCCTCAGCCTGCGCCCTTGGACTTGGAATGGTGGTAATAGTAGTGGCTCTACTCCAGCCCCTTCAACTCCAACCCCCTCAGCCCCAACTCCTCCAGCCACTTGA | 969 | 48.19 | MNDLFSSRSFSRDSHVVEMGISSSSPTAANLDKFFEDVESVKDELKELEKLYQNLYDSHEQSKTLHNAKAVKDLRSRMDSDVSLALKKAKLIKVRLEALDRSNASNRTQPGCGPGSSSDRTRTSVLSGLRKKLQDSMEGFNNLRQQISSEYRETVQRRYFTVTGENPDEKTIDILISTGESETFLQKAIQEQGRGRILDTISEIQERHDAVKDLERNLQELHQVFMDMAVLVHEQGEKLDDIESHVNRAHSFVRGGTQELSKARVYQKSTRKWTIIGIIILLIVALIIILSLRPWTWNGGNSSGSTPAPSTPTPSAPTPPAT | 322 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 7547582 | 7549705 | - | Cp4.1LG08g09630.1 | Cpe08g00962 | 473928 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe08g00962 | 322 | PANTHER | SYNTAXIN | 9 | 300 | IPR045242 | - | |
Cpe08g00962 | 322 | MobiDBLite | consensus disorder prediction | 102 | 124 | - | - | |
Cpe08g00962 | 322 | Pfam | SNARE domain | 237 | 289 | IPR000727 | - | |
Cpe08g00962 | 322 | SMART | SynN_4 | 26 | 152 | IPR006011 | GO:0016020 | |
Cpe08g00962 | 322 | MobiDBLite | consensus disorder prediction | 301 | 322 | - | - | |
Cpe08g00962 | 322 | Gene3D | - | 28 | 161 | - | - | |
Cpe08g00962 | 322 | Gene3D | - | 198 | 293 | - | - | |
Cpe08g00962 | 322 | PANTHER | SYNTAXIN OF PLANTS 122 PROTEIN | 9 | 300 | - | - | |
Cpe08g00962 | 322 | Coils | Coil | 31 | 58 | - | - | |
Cpe08g00962 | 322 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 201 | 263 | IPR000727 | - | |
Cpe08g00962 | 322 | SUPERFAMILY | t-snare proteins | 30 | 256 | IPR010989 | GO:0016020|GO:0016192 | |
Cpe08g00962 | 322 | Coils | Coil | 204 | 224 | - | - | |
Cpe08g00962 | 322 | ProSitePatterns | Syntaxin / epimorphin family signature. | 207 | 246 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 | |
Cpe08g00962 | 322 | CDD | SNARE_syntaxin1-like | 200 | 262 | - | - | |
Cpe08g00962 | 322 | SMART | tSNARE_6 | 196 | 263 | IPR000727 | - | |
Cpe08g00962 | 322 | Pfam | Syntaxin | 33 | 236 | IPR006011 | GO:0016020 | |
Cpe08g00962 | 322 | CDD | SynN | 31 | 188 | IPR006011 | GO:0016020 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cpe08g00962 | Cpe10g01038 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe08g00962 | Cpe-Chr8:7547582 | Cpe20g00409 | Cpe-Chr20:2339171 | 9.28E-121 | dispersed | |
Cpe14g00975 | Cpe-Chr14:8249458 | Cpe08g00962 | Cpe-Chr8:7547582 | 1.63E-09 | dispersed | |
Cpe19g00503 | Cpe-Chr19:4303812 | Cpe08g00962 | Cpe-Chr8:7547582 | 3.12E-134 | wgd | |
Cpe03g00316 | Cpe-Chr3:1660184 | Cpe08g00962 | Cpe-Chr8:7547582 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe08g00962 | K08486 | - | csv:101208931 | 503.056 |