Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00965 ATGGAAGAAATCGAAGTCCCCAACTACTTCCTCTGCCCAATCTCCCTCCAAATCATGAAAGACCCAGTCACCGTTCCCTCCGGCATCACCTACGACCGCCCCTCCATCGAAACCTGGCTCTTCTCCACCAAAAACGCCTCATGCCCCATCACCAAGCTCCCCATCCCCGCCGACTCCGATTCCCTCACCCCCAACCACACCCTCCGCCGCTTAATCCAAGCCTGGTGCACTCTCCACTCCGATCATGGCATCGAACGCTTCCCCACTCCCAAGCCCCCCATCAACAAGCCACAAATCCACAAACTCATCTCCTCCTCTTCCTCTACTCCCTCCTCCCTTCTCTCCTGCATTCGCCGCCTCCGTTCCCTCGCCGCCGAATCCGAATCCAACCGCCGATGCATCGAATCCGCCGGCGCCCCTGAGTTTCTAGCCTCTGTTATCATCAATTCCATCTCCGACAACGACAACGAAACCGCCTCGATTTCCTGCCATGAAGCGCTTTCTACTCTCCATAATCTCCGCCTCTCCGATTCCAAGTTGAAGAGCTTGACCGTAAACGCCGAGCTTTTTGATTCGTTGACGAAGGTCATGGAACAGGGGACGTACGAGTCGCGAGCGTACGCGGCGTTGCTTTTGAAATCACTACTGGAAGTGGCGGACCCAATGGAGCTGACATTCCTAAAATCCGAACTGTTTGTGGAAATTGTTGGGATCTTGAAGGATCAGACATCGCAGCAGAGTTTGAAAGCGGCATTGGGGATTTTGATTACGGCCTGCACATGGGGGAGGAACAAAGTGAAGGCAGTTGAGGCAGGTGGGGTTGTGGCTTTAGTCGAGATATTACTCTCGGGACCGGAGAGGAGGGTGTCCGAGATGGTGTTGACGGCGATGGATTTGCTATGTGGGTGTGCAGAAGGGCGAGCGGCGCTTCTGGGTCACGGCGGAGGGATGGCAGTGGTTTCGAAGAAGATCTTGAGAGTGTCGCAAGTGGGGAGTGAGAGGGCGGTTAGGATTCTGTTTTGGGTGGCGAAATATTCAGGGAGTCCGGCGGTGTTGACGGAAATGGCGCAGTTGGGGATCGTGGCGAAGCTTTGCCTGGTTCTGCAAGTTGAAAGTGGGAGCAAGACGAAGGAGAAGGCCAAAGAAATTTTGAAGATGCATGCTCGAGTTTGGAGGAATTCGGCTTGTATTCCTTCCAAATTGGCTTCTTCTTATCCTGCAAATTAA 1227 53.95 MEEIEVPNYFLCPISLQIMKDPVTVPSGITYDRPSIETWLFSTKNASCPITKLPIPADSDSLTPNHTLRRLIQAWCTLHSDHGIERFPTPKPPINKPQIHKLISSSSSTPSSLLSCIRRLRSLAAESESNRRCIESAGAPEFLASVIINSISDNDNETASISCHEALSTLHNLRLSDSKLKSLTVNAELFDSLTKVMEQGTYESRAYAALLLKSLLEVADPMELTFLKSELFVEIVGILKDQTSQQSLKAALGILITACTWGRNKVKAVEAGGVVALVEILLSGPERRVSEMVLTAMDLLCGCAEGRAALLGHGGGMAVVSKKILRVSQVGSERAVRILFWVAKYSGSPAVLTEMAQLGIVAKLCLVLQVESGSKTKEKAKEILKMHARVWRNSACIPSKLASSYPAN 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7576436 7577662 - Cp4.1LG08g09610.1 Cpe08g00965 473931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00965 408 ProSiteProfiles U-box domain profile. 5 82 IPR003613 GO:0004842|GO:0016567
Cpe08g00965 408 PANTHER WDSAM1 PROTEIN 1 406 IPR045185 GO:0061630
Cpe08g00965 408 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 1 406 - -
Cpe08g00965 408 SUPERFAMILY RING/U-box 3 82 - -
Cpe08g00965 408 CDD RING-Ubox_PUB 10 52 IPR045210 -
Cpe08g00965 408 Gene3D - 97 403 IPR011989 -
Cpe08g00965 408 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 85 IPR013083 -
Cpe08g00965 408 Pfam U-box domain 6 79 IPR003613 GO:0004842|GO:0016567
Cpe08g00965 408 SUPERFAMILY ARM repeat 101 374 IPR016024 -
Cpe08g00965 408 SMART Ubox_2 9 75 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00066 Cpe-Chr1:401252 Cpe08g00965 Cpe-Chr8:7576436 4.00E-58 dispersed
Cpe08g00965 Cpe-Chr8:7576436 Cpe10g01029 Cpe-Chr10:5977745 3.57E-156 dispersed
Cpe16g00824 Cpe-Chr16:7940610 Cpe08g00965 Cpe-Chr8:7576436 1.65E-143 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00965 - - csv:101208445 567.385