Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00966 ATGGCGACGTACCTTCATGCCAATTCTGAGTTTCAATCTGCTGCTGATGCTGGCCTTCAAACCCTTGTCTTAATGAATCCCGGCTATGTTCAATTCTCCGACACTCCACCGCCGCCTTCATCGCCGCCTCCCTCACACCCTAATCTTGTTTTCTTCAATTCTGCTTCGCCTGCTAATGCCTACTCTGCACAGACTCTGCCTCACCCGCCTTCTCATGCTCAACAGTTTGTCGGCATCCCACTACCGTCGACGACAACCGCTTCTCCGACGTCTCAAGACCATAATTTGTATTCCTTCAATACCCACCATGATATCTCCTCCTTACATGGCTTTGTTCCTCGTGTTCAGTATGATATTTGGAAACCAATTAACCCATCCACGACGGCGCGTGAGAGTTCACGCGCTCAACAGGGTTTGTCTTTGAGTCTGTCTTCACAGCAGGGTTTTGGGTCGAGAGAGATTCAATCGCAAACCCATCAGGCGGTTTCCGGCGAGGAGAACGTTCGGATCTCCGGTGGATCGTCTTCCTCTGCTTCCGGTATCACCAATGGCGCGGCTGGAATTCAGGGCGTTTTAATTAGTTCTAAGTATCTCAAGGCTGCTGTAGAACTTCTAGATGAGGTTGTTAATGTAACCCAAAACGGGATTAAGAACGAATCGTCTCCTAAAAAGGCCGCCGGAAATCAAAACAAGATGAATGGAGATGCATCCGCCGCCGCCACAACTGCCGATGGTTCTTTCGAAGGGGATGCCGACCGAAAACGCGCCGCCGATTTAACGACCGCCGAGAGACAAGAAATTCAGATGAAGAAAGAAAAGCTTATCAGTATGCTCGATGAGGTAGAGCAGAGGTACAGACACTACCACCACCAAATGAAGATAGTGATATCCACATTTGAAAAGGCGGCCGGAGCTGGGTCGGCAAGAACCTACACCGCGCTGGCACTTCAGACAATTTCGAAGCAATTCCGGTGCTTAAAAGACGCAATCACCGGCCAAATCAAAGCGGCGAACAAGAGTTTAGGAGAAGAAGAATACAACGGAAGAAAAATGGAAGGTTCCCGGTTGAAATTCGTCGATAACCATCTCCGGCAACAGCGAGCTCTGCAACAATTGGGTATGATCCAACACAATGCGTGGAGACCCCAACGAGGCTTACCAGAGCGATCCGTTTCGATTCTTCGCGCTTGGCTGTTCGAACACTTTCTCCATCCTTACCCTAAAGATTCAGACAAACACATGCTCGCTAAGCAAACAGGGCTCACCAGAGGCCAGGTTTCGAATTGGTTCATAAATGCGAGAGTTCGACTGTGGAAGCCCATGGTGGAAGAGATGTATTTGGAGGAAGTCAAGGAACAAGAACAGAACGGCGGTGGCGGATTGGCACCGTCGACGGCTGCGGAAAAAAGCAACGACGATTCAGATTCAAAAAGCCCAAATTCAAAACAAGAAAACTCTCCAAACCAAAACGTTCATCCTTCAGTCTCAATCTCAACGTCCTCCGATGGAAATGTTCGAAACCCATCTGGGTTTACCCTCATCGGAACCTCATCGGAGCTCGACGGAATCACTCAACGAAGCCCCAAGAAACAGAGAGGCACCGAAATCCTCTATTCCTCAAACAACAACAACAACAACAACAACGTCCAGTTCATAAACATGGACATCAAACTCCGAGAAGAAGAACAACAAAATCAAAATCAAAATCTCCATCATCTTCCAATGAAATTCGACGAGGAACGACAAAACAGAGATGGGTATTCATTTCTAGGCCAACCCCATTTCAACATGGCCGGATTCGGTCAATACCCAATCGGAGAAATCGGCCGATTCGACGCCGATCAGTTCACTCCAAGATTCTCCGGCAACAATGGCGTCTCATTGAGTCTAGGCCTTCCCCATGGCGAAAATCTCTCCGTAAACGCAGCCACCCACCAAGCCTTTCTCCCAAATCAAAGCATCCATTTAGGAAGAAGAACAGAAATGGGAAAACCCACTGATTTTTCCGCCATTAACGCCTCAACACCTCACTCCTCCACTGCTTTTGAAACCATCAACATCCAAAATGGCAAAAGGTTTGCAGCTCAGTTACTGCCGGACTTCGTGGCCTGA 2112 48.48 MATYLHANSEFQSAADAGLQTLVLMNPGYVQFSDTPPPPSSPPPSHPNLVFFNSASPANAYSAQTLPHPPSHAQQFVGIPLPSTTTASPTSQDHNLYSFNTHHDISSLHGFVPRVQYDIWKPINPSTTARESSRAQQGLSLSLSSQQGFGSREIQSQTHQAVSGEENVRISGGSSSSASGITNGAAGIQGVLISSKYLKAAVELLDEVVNVTQNGIKNESSPKKAAGNQNKMNGDASAAATTADGSFEGDADRKRAADLTTAERQEIQMKKEKLISMLDEVEQRYRHYHHQMKIVISTFEKAAGAGSARTYTALALQTISKQFRCLKDAITGQIKAANKSLGEEEYNGRKMEGSRLKFVDNHLRQQRALQQLGMIQHNAWRPQRGLPERSVSILRAWLFEHFLHPYPKDSDKHMLAKQTGLTRGQVSNWFINARVRLWKPMVEEMYLEEVKEQEQNGGGGLAPSTAAEKSNDDSDSKSPNSKQENSPNQNVHPSVSISTSSDGNVRNPSGFTLIGTSSELDGITQRSPKKQRGTEILYSSNNNNNNNNVQFINMDIKLREEEQQNQNQNLHHLPMKFDEERQNRDGYSFLGQPHFNMAGFGQYPIGEIGRFDADQFTPRFSGNNGVSLSLGLPHGENLSVNAATHQAFLPNQSIHLGRRTEMGKPTDFSAINASTPHSSTAFETINIQNGKRFAAQLLPDFVA 703
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7581769 7585464 - Cp4.1LG08g09640.1 Cpe08g00966 473932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00966 703 MobiDBLite consensus disorder prediction 126 180 - -
Cpe08g00966 703 ProSiteProfiles 'Homeobox' domain profile. 377 440 IPR001356 GO:0003677
Cpe08g00966 703 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 6 654 - -
Cpe08g00966 703 MobiDBLite consensus disorder prediction 450 543 - -
Cpe08g00966 703 MobiDBLite consensus disorder prediction 217 240 - -
Cpe08g00966 703 SMART prehox3 186 332 IPR006563 -
Cpe08g00966 703 SUPERFAMILY Homeodomain-like 381 446 IPR009057 -
Cpe08g00966 703 Pfam Homeobox KN domain 397 436 IPR008422 GO:0003677|GO:0006355
Cpe08g00966 703 Coils Coil 264 284 - -
Cpe08g00966 703 MobiDBLite consensus disorder prediction 247 263 - -
Cpe08g00966 703 Pfam Associated with HOX 191 331 IPR006563 -
Cpe08g00966 703 MobiDBLite consensus disorder prediction 480 543 - -
Cpe08g00966 703 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 5 6 654 - -
Cpe08g00966 703 MobiDBLite consensus disorder prediction 61 92 - -
Cpe08g00966 703 MobiDBLite consensus disorder prediction 217 263 - -
Cpe08g00966 703 CDD homeodomain 380 441 IPR001356 GO:0003677
Cpe08g00966 703 Gene3D - 383 445 - -
Cpe08g00966 703 SMART HOX_1 380 444 IPR001356 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe03g00311 Cpe08g00966 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00449 Cpe-Chr5:2586530 Cpe08g00966 Cpe-Chr8:7581769 1.35E-179 dispersed
Cpe08g00966 Cpe-Chr8:7581769 Cpe16g00265 Cpe-Chr16:4649470 8.91E-97 dispersed
Cpe11g00080 Cpe-Chr11:425117 Cpe08g00966 Cpe-Chr8:7581769 3.09E-46 dispersed
Cpe16g00823 Cpe-Chr16:7935654 Cpe08g00966 Cpe-Chr8:7581769 8.97E-145 wgd
Cpe03g00311 Cpe-Chr3:1597464 Cpe08g00966 Cpe-Chr8:7581769 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49898 PF07526 POX 1.00E-46 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00966 - - csv:101208201 1046.96