Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00992 ATGTCCTTAAACCACTTCTCTTCGGACTGCCATCTCCACCACCCCAAATCATCCGCCTCCGCCGTCGACCACCACCTCATCCACCACCACCACCACAAGCACCCCATGTTCGAAAAGCCCTTGACTCCGAGCGACGTTGGCAAGCTCAACCGCCTCGTCATCCCCAAGCAATATGCTGAAAAGTATTTTCCACTTTCCCCCGGCGGCGACACGGCGGACAAGGGCTTGCTTCTTAGCTTCGAAGATGAGTCCGGTAAGATGTGGCGCTTCCGTTACTCGTATTGGAATAGTAGCCAGAGCTATGTGCTCACTAAAGGGTGGACCCGCTTTGTCAAAGAGAAGCGCCTTGACGCCGGTGATGTCGTCGTCTTTGAACGCCACCGCCGTGATGGGGATAGGTTGTTCATTGGGTGGAAGCGGCGCTCGCCGGTGTCCACGGCGGAGACGGCGGCGGCGACTAGAGTCTTCTGTTCTTCAAACCCATATCCTTCTCATCATCATAATCATAATCATCTTCCTTCACCGCCATACCAATCTTCTGATTGTCCTCATGCAGAGTCCTCTGTTCAGAGTCAAACAGTGTCGGTTGGGAATTCAAAGATACTGCGTCTGTTCGGGGTGGACTTGGAGTGCCAAACCGACGTGTCGGAACCTGAACAGCCCTCCACGCTCGGTGGCGGGTCGGGTCTATCGGGTCAAGATCCAACCCTTCATAGCTTCTACACACACTGA 732 54.51 MSLNHFSSDCHLHHPKSSASAVDHHLIHHHHHKHPMFEKPLTPSDVGKLNRLVIPKQYAEKYFPLSPGGDTADKGLLLSFEDESGKMWRFRYSYWNSSQSYVLTKGWTRFVKEKRLDAGDVVVFERHRRDGDRLFIGWKRRSPVSTAETAAATRVFCSSNPYPSHHHNHNHLPSPPYQSSDCPHAESSVQSQTVSVGNSKILRLFGVDLECQTDVSEPEQPSTLGGGSGLSGQDPTLHSFYTH 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7710465 7711986 - Cp4.1LG08g10050.1 Cpe08g00992 473958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00992 243 Pfam B3 DNA binding domain 37 141 IPR003340 GO:0003677
Cpe08g00992 243 MobiDBLite consensus disorder prediction 164 190 - -
Cpe08g00992 243 MobiDBLite consensus disorder prediction 215 243 - -
Cpe08g00992 243 Gene3D - 27 153 IPR015300 -
Cpe08g00992 243 ProSiteProfiles B3 DNA-binding domain profile. 37 142 IPR003340 GO:0003677
Cpe08g00992 243 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 14 221 IPR044800 GO:0003700
Cpe08g00992 243 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0156000 14 221 - -
Cpe08g00992 243 CDD B3_DNA 35 131 IPR003340 GO:0003677
Cpe08g00992 243 SUPERFAMILY DNA-binding pseudobarrel domain 32 142 IPR015300 -
Cpe08g00992 243 SMART B3_2 37 142 IPR003340 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe08g00992 Cpe14g00507 CCT
Cpe08g00992 Cpe14g00507 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g00992 Cpe-Chr8:7710465 Cpe12g00470 Cpe-Chr12:4456795 4.56E-50 dispersed
Cpe03g00288 Cpe-Chr3:1474757 Cpe08g00992 Cpe-Chr8:7710465 2.05E-112 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49901 PF02362 B3 8.00E-31 CL0405 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00992 - - bhj:120091802 326.25