Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe08g00992 | ATGTCCTTAAACCACTTCTCTTCGGACTGCCATCTCCACCACCCCAAATCATCCGCCTCCGCCGTCGACCACCACCTCATCCACCACCACCACCACAAGCACCCCATGTTCGAAAAGCCCTTGACTCCGAGCGACGTTGGCAAGCTCAACCGCCTCGTCATCCCCAAGCAATATGCTGAAAAGTATTTTCCACTTTCCCCCGGCGGCGACACGGCGGACAAGGGCTTGCTTCTTAGCTTCGAAGATGAGTCCGGTAAGATGTGGCGCTTCCGTTACTCGTATTGGAATAGTAGCCAGAGCTATGTGCTCACTAAAGGGTGGACCCGCTTTGTCAAAGAGAAGCGCCTTGACGCCGGTGATGTCGTCGTCTTTGAACGCCACCGCCGTGATGGGGATAGGTTGTTCATTGGGTGGAAGCGGCGCTCGCCGGTGTCCACGGCGGAGACGGCGGCGGCGACTAGAGTCTTCTGTTCTTCAAACCCATATCCTTCTCATCATCATAATCATAATCATCTTCCTTCACCGCCATACCAATCTTCTGATTGTCCTCATGCAGAGTCCTCTGTTCAGAGTCAAACAGTGTCGGTTGGGAATTCAAAGATACTGCGTCTGTTCGGGGTGGACTTGGAGTGCCAAACCGACGTGTCGGAACCTGAACAGCCCTCCACGCTCGGTGGCGGGTCGGGTCTATCGGGTCAAGATCCAACCCTTCATAGCTTCTACACACACTGA | 732 | 54.51 | MSLNHFSSDCHLHHPKSSASAVDHHLIHHHHHKHPMFEKPLTPSDVGKLNRLVIPKQYAEKYFPLSPGGDTADKGLLLSFEDESGKMWRFRYSYWNSSQSYVLTKGWTRFVKEKRLDAGDVVVFERHRRDGDRLFIGWKRRSPVSTAETAAATRVFCSSNPYPSHHHNHNHLPSPPYQSSDCPHAESSVQSQTVSVGNSKILRLFGVDLECQTDVSEPEQPSTLGGGSGLSGQDPTLHSFYTH | 243 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 7710465 | 7711986 | - | Cp4.1LG08g10050.1 | Cpe08g00992 | 473958 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe08g00992 | 243 | Pfam | B3 DNA binding domain | 37 | 141 | IPR003340 | GO:0003677 | |
Cpe08g00992 | 243 | MobiDBLite | consensus disorder prediction | 164 | 190 | - | - | |
Cpe08g00992 | 243 | MobiDBLite | consensus disorder prediction | 215 | 243 | - | - | |
Cpe08g00992 | 243 | Gene3D | - | 27 | 153 | IPR015300 | - | |
Cpe08g00992 | 243 | ProSiteProfiles | B3 DNA-binding domain profile. | 37 | 142 | IPR003340 | GO:0003677 | |
Cpe08g00992 | 243 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 | 14 | 221 | IPR044800 | GO:0003700 | |
Cpe08g00992 | 243 | PANTHER | B3 DOMAIN-CONTAINING PROTEIN OS11G0156000 | 14 | 221 | - | - | |
Cpe08g00992 | 243 | CDD | B3_DNA | 35 | 131 | IPR003340 | GO:0003677 | |
Cpe08g00992 | 243 | SUPERFAMILY | DNA-binding pseudobarrel domain | 32 | 142 | IPR015300 | - | |
Cpe08g00992 | 243 | SMART | B3_2 | 37 | 142 | IPR003340 | GO:0003677 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cpe08g00992 | Cpe14g00507 | CCT | |
Cpe08g00992 | Cpe14g00507 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe08g00992 | Cpe-Chr8:7710465 | Cpe12g00470 | Cpe-Chr12:4456795 | 4.56E-50 | dispersed | |
Cpe03g00288 | Cpe-Chr3:1474757 | Cpe08g00992 | Cpe-Chr8:7710465 | 2.05E-112 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
49901 | PF02362 | B3 | 8.00E-31 | CL0405 | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe08g00992 | - | - | bhj:120091802 | 326.25 |