Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g01033 ATGGACTTTCATCTGAAGCAATGTAGAGAGCAGGAGGAGTCAGAGGAACAACATTCTGCAAAGATATCCAAGTTCTTTCTTCAACACCCACAATCCTCTGTTTCCTCTGTTTCCTCTGTTTCCTCTGTTTCCTCTGTTCTTCCTCTCTTCGTATCTGATTCCAACAACAACTCCAAAGCTTCATCAATCCTCTCGCCATTTCCCGATTCAACTCCTTCTGCTAATACACTCCCAAGGATGTGGGGTTATTTCAGTGCTGCTCAGAGGCAGGAGCTTGAGCTTCAAGCTCTCATTTTCCGGTATATGTTGGCCGGAGCTGCCGTACCGCCGGAGCTTCTTCTCACCATTAAGAAAAGCCTTCTTTCTTCCAGTACTCCATTTTTTCTTCATCACCCTCTTCAGCATTTCCCTCATTATCCCACTTCTTTGTTGCAAGCAGGTTACTGGGGCAGAGCCGCCATGGATCCTGAGCCCGGCCGGTGTCGGAGAACCGACGGCAAAAAATGGCGTTGTTCAAGAGATGTGGTCGCCGGGCAGAAATACTGCGAGCGCCACATGCACCGTGGCCGTAACCGTTCAAGAAAGCCTGTGGAAACTGCCACAATTAACCCCAGCACCACCACATCGACCGCCGGAGCTAATGGTGGCGGTGGTGGTTGTTCTCTCAGTTCCAACACCAACCGTGTTGTTGGTGGCGGTGGTCGGCCTTTTCTGGCTGTGGAAAGTGGGAATTATTTCTCTTTGTCTGGACAAACCCCATCCGTTGATCTTCTCCATCTTAATCAACGTTCTTGCTCGGATTCCTTATCGGAGCACAAGAATTTCTATGAATCCCATAAGGAAGCCGTTGCCGGAGACGCCAAGTCCGACAGCCATATATTAAGGCATTTCTTCGACGATTGGCCAAGGTCCAACAACAATGGGAGCGACAACGTCACCCGAAAAATGAACTCTACATCCGCTTCCACCACTTCCCTTTCGATCTCCATACCCGAGAACCCATCATCCTCTTCGGACGTGTCGTTGAAATTGTCGACAGGAGGAAGCTCTGATCAAGGGGTTGGCCATCATATTCATCAGGATGGCAATTCTGAGCGGGAGCACACGCATTTGAATTGGGCAGCTGGGTGGGCAGCCACGCAGATGGCGTCGATGGGTGGACCGCTGGCAGAGGTGCTGCGATCGACTAATAACAACTCGTCGCCAACGAGTATACTACATCAGTTGCAAAGAGCAACGAACTCGGAAGCTAGCTATATTAGCACTTGA 1269 50.2 MDFHLKQCREQEESEEQHSAKISKFFLQHPQSSVSSVSSVSSVSSVLPLFVSDSNNNSKASSILSPFPDSTPSANTLPRMWGYFSAAQRQELELQALIFRYMLAGAAVPPELLLTIKKSLLSSSTPFFLHHPLQHFPHYPTSLLQAGYWGRAAMDPEPGRCRRTDGKKWRCSRDVVAGQKYCERHMHRGRNRSRKPVETATINPSTTTSTAGANGGGGGCSLSSNTNRVVGGGGRPFLAVESGNYFSLSGQTPSVDLLHLNQRSCSDSLSEHKNFYESHKEAVAGDAKSDSHILRHFFDDWPRSNNNGSDNVTRKMNSTSASTTSLSISIPENPSSSSDVSLKLSTGGSSDQGVGHHIHQDGNSEREHTHLNWAAGWAATQMASMGGPLAEVLRSTNNNSSPTSILHQLQRATNSEASYIST 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7928427 7930864 - Cp4.1LG08g10400.1 Cpe08g01033 473999

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g01033 422 MobiDBLite consensus disorder prediction 196 219 - -
Cpe08g01033 422 PANTHER - 7 422 IPR031137 GO:0005634|GO:0006351|GO:0032502
Cpe08g01033 422 PANTHER GROWTH-REGULATING FACTOR 3 7 422 - -
Cpe08g01033 422 MobiDBLite consensus disorder prediction 302 357 - -
Cpe08g01033 422 MobiDBLite consensus disorder prediction 188 219 - -
Cpe08g01033 422 ProSiteProfiles QLQ domain profile. 83 118 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cpe08g01033 422 Pfam QLQ 84 116 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cpe08g01033 422 ProSiteProfiles WRC domain profile. 155 199 IPR014977 -
Cpe08g01033 422 SMART QLQ_2 82 118 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cpe08g01033 422 MobiDBLite consensus disorder prediction 302 366 - -
Cpe08g01033 422 Pfam WRC 156 198 IPR014977 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g01033 - - - cpep:111791263 574.704
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe03g00250 Cpe08g01033 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g01033 Cpe-Chr8:7928427 Cpe16g00168 Cpe-Chr16:3771041 5.73E-43 dispersed
Cpe03g00250 Cpe-Chr3:1245735 Cpe08g01033 Cpe-Chr8:7928427 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g1025 . . . . Bpe04g01542 . . . Cmo06g00458 Cmo14g00280 . . . . . . Cpe08g01033 . . . . . . . . . . . . . . . . Cone13ag1203 Cone19ag1189 . . . Cme04g02423 . Blo09g00512 Bda03g01681 . . . . . Sed02g0553 . . Cma06g00457 Cma14g00291 Car06g00398 Car14g00261 Cpe03g00250 . Bhi11g01964 Tan08g1759 Cmetu04g0675 Lac10g2895 . . . Cla10g01826 Cam10g1886 Cec10g1941 Cco10g1912 Clacu10g1901 Cmu10g2647 Cre10g2036 Lsi03g01923 Csa03g03391 Chy04g01955 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe08g01033 CCT 1 413 GRF Transcription Factor Family AT3G52910 50.4 2.2e-67 253.4
Cpe02g01745 CST 11 110 GRF Transcription Factor Family AT3G13960 82.0 6.7e-51 198.7
Cpe11g01195 . 1523 1627 GRF Transcription Factor Family AT3G13960 73.3 6.7e-43 172.2
Cpe18g00326 CST 8 110 GRF Transcription Factor Family AT3G13960 71.8 5.7e-42 169.1
Cpe04g01028 CST 8 110 GRF Transcription Factor Family AT3G13960 72.8 7.4e-42 168.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005938 1 2 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49903 PF08879 WRC 2.70E-22 No_clan Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe08g01033 Cpe_Chr08 FPKM 41.61586 45.563812 0.0 0.588798 3.421682 3.233084 4.727311 2.204246 2.356417 1.602022