Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g01033 ATGGACTTTCATCTGAAGCAATGTAGAGAGCAGGAGGAGTCAGAGGAACAACATTCTGCAAAGATATCCAAGTTCTTTCTTCAACACCCACAATCCTCTGTTTCCTCTGTTTCCTCTGTTTCCTCTGTTTCCTCTGTTCTTCCTCTCTTCGTATCTGATTCCAACAACAACTCCAAAGCTTCATCAATCCTCTCGCCATTTCCCGATTCAACTCCTTCTGCTAATACACTCCCAAGGATGTGGGGTTATTTCAGTGCTGCTCAGAGGCAGGAGCTTGAGCTTCAAGCTCTCATTTTCCGGTATATGTTGGCCGGAGCTGCCGTACCGCCGGAGCTTCTTCTCACCATTAAGAAAAGCCTTCTTTCTTCCAGTACTCCATTTTTTCTTCATCACCCTCTTCAGCATTTCCCTCATTATCCCACTTCTTTGTTGCAAGCAGGTTACTGGGGCAGAGCCGCCATGGATCCTGAGCCCGGCCGGTGTCGGAGAACCGACGGCAAAAAATGGCGTTGTTCAAGAGATGTGGTCGCCGGGCAGAAATACTGCGAGCGCCACATGCACCGTGGCCGTAACCGTTCAAGAAAGCCTGTGGAAACTGCCACAATTAACCCCAGCACCACCACATCGACCGCCGGAGCTAATGGTGGCGGTGGTGGTTGTTCTCTCAGTTCCAACACCAACCGTGTTGTTGGTGGCGGTGGTCGGCCTTTTCTGGCTGTGGAAAGTGGGAATTATTTCTCTTTGTCTGGACAAACCCCATCCGTTGATCTTCTCCATCTTAATCAACGTTCTTGCTCGGATTCCTTATCGGAGCACAAGAATTTCTATGAATCCCATAAGGAAGCCGTTGCCGGAGACGCCAAGTCCGACAGCCATATATTAAGGCATTTCTTCGACGATTGGCCAAGGTCCAACAACAATGGGAGCGACAACGTCACCCGAAAAATGAACTCTACATCCGCTTCCACCACTTCCCTTTCGATCTCCATACCCGAGAACCCATCATCCTCTTCGGACGTGTCGTTGAAATTGTCGACAGGAGGAAGCTCTGATCAAGGGGTTGGCCATCATATTCATCAGGATGGCAATTCTGAGCGGGAGCACACGCATTTGAATTGGGCAGCTGGGTGGGCAGCCACGCAGATGGCGTCGATGGGTGGACCGCTGGCAGAGGTGCTGCGATCGACTAATAACAACTCGTCGCCAACGAGTATACTACATCAGTTGCAAAGAGCAACGAACTCGGAAGCTAGCTATATTAGCACTTGA 1269 50.2 MDFHLKQCREQEESEEQHSAKISKFFLQHPQSSVSSVSSVSSVSSVLPLFVSDSNNNSKASSILSPFPDSTPSANTLPRMWGYFSAAQRQELELQALIFRYMLAGAAVPPELLLTIKKSLLSSSTPFFLHHPLQHFPHYPTSLLQAGYWGRAAMDPEPGRCRRTDGKKWRCSRDVVAGQKYCERHMHRGRNRSRKPVETATINPSTTTSTAGANGGGGGCSLSSNTNRVVGGGGRPFLAVESGNYFSLSGQTPSVDLLHLNQRSCSDSLSEHKNFYESHKEAVAGDAKSDSHILRHFFDDWPRSNNNGSDNVTRKMNSTSASTTSLSISIPENPSSSSDVSLKLSTGGSSDQGVGHHIHQDGNSEREHTHLNWAAGWAATQMASMGGPLAEVLRSTNNNSSPTSILHQLQRATNSEASYIST 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7928427 7930864 - Cp4.1LG08g10400.1 Cpe08g01033 473999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g01033 422 MobiDBLite consensus disorder prediction 196 219 - -
Cpe08g01033 422 PANTHER - 7 422 IPR031137 GO:0005634|GO:0006351|GO:0032502
Cpe08g01033 422 PANTHER GROWTH-REGULATING FACTOR 3 7 422 - -
Cpe08g01033 422 MobiDBLite consensus disorder prediction 302 357 - -
Cpe08g01033 422 MobiDBLite consensus disorder prediction 188 219 - -
Cpe08g01033 422 ProSiteProfiles QLQ domain profile. 83 118 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cpe08g01033 422 Pfam QLQ 84 116 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cpe08g01033 422 ProSiteProfiles WRC domain profile. 155 199 IPR014977 -
Cpe08g01033 422 SMART QLQ_2 82 118 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cpe08g01033 422 MobiDBLite consensus disorder prediction 302 366 - -
Cpe08g01033 422 Pfam WRC 156 198 IPR014977 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe03g00250 Cpe08g01033 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g01033 Cpe-Chr8:7928427 Cpe16g00168 Cpe-Chr16:3771041 5.73E-43 dispersed
Cpe03g00250 Cpe-Chr3:1245735 Cpe08g01033 Cpe-Chr8:7928427 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49903 PF08879 WRC 2.70E-22 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g01033 - - cpep:111791263 574.704