Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g01036 ATGGCTACTTCCGGCCGCCACCCCGTTTACCGAGGCGTTCGACGCCGCAACACAGGCAAATGGGTGTCGGAAATTCGCGAGCCCCGGAAGCCTAACCGGATTTGGTTGGGAACCTTCCCGACAGCTGAAATGGCGGCTGTGGCTTATGACGTTGCTGCCCTTGCTCTCAAGGGCCACGACACCCACCTCAATTTCCCCAATTCTGCGTCCTCTCTCCCTGTTCCTGCTTCACGTTCACCCTCTGATATTCAGGCTGCCGCCGCCTCTGCCGCCGCTGCGCTTGGTGCCGCAGCAGCCGCCATCGAGGCAAGAAGTGGTTTTCACGGTGGCCGTAGTAATGATCCAGGGGAAGTGGGAAATCATTTCATGGACGAGGACTTGATTTTTGATATGCCTAATGTTCTAATGAATATGGCGGAAGGAATGCTTCTTAGCCCTCCCCGTTTCAATAATCATGGTGGCGATGACGACAGAGCCGATCATGGTACCGAAAACCTTTGGAATTTTTTCTAA 513 54.39 MATSGRHPVYRGVRRRNTGKWVSEIREPRKPNRIWLGTFPTAEMAAVAYDVAALALKGHDTHLNFPNSASSLPVPASRSPSDIQAAAASAAAALGAAAAAIEARSGFHGGRSNDPGEVGNHFMDEDLIFDMPNVLMNMAEGMLLSPPRFNNHGGDDDRADHGTENLWNFF 170
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7953089 7953601 - Cp4.1LG08g10410.1 Cpe08g01036 474002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g01036 170 PRINTS Ethylene responsive element binding protein signature 10 21 IPR001471 GO:0003700|GO:0006355
Cpe08g01036 170 PRINTS Ethylene responsive element binding protein signature 32 48 IPR001471 GO:0003700|GO:0006355
Cpe08g01036 170 ProSiteProfiles AP2/ERF domain profile. 9 66 IPR001471 GO:0003700|GO:0006355
Cpe08g01036 170 SMART rav1_2 9 72 IPR001471 GO:0003700|GO:0006355
Cpe08g01036 170 Pfam AP2 domain 8 59 IPR001471 GO:0003700|GO:0006355
Cpe08g01036 170 SUPERFAMILY DNA-binding domain 9 68 IPR016177 GO:0003677
Cpe08g01036 170 CDD AP2 10 68 IPR001471 GO:0003700|GO:0006355
Cpe08g01036 170 Gene3D AP2/ERF domain 9 68 IPR036955 GO:0003700|GO:0006355
Cpe08g01036 170 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 3 169 - -
Cpe08g01036 170 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF024 3 169 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe03g00246 Cpe08g01036 CCT
Cpe03g00246 Cpe08g01036 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00305 Cpe-Chr5:1712001 Cpe08g01036 Cpe-Chr8:7953089 6.52E-39 dispersed
Cpe05g00306 Cpe-Chr5:1715512 Cpe08g01036 Cpe-Chr8:7953089 2.41E-51 dispersed
Cpe07g01027 Cpe-Chr7:9274513 Cpe08g01036 Cpe-Chr8:7953089 1.77E-30 dispersed
Cpe08g01036 Cpe-Chr8:7953089 Cpe09g00113 Cpe-Chr9:658358 6.89E-37 dispersed
Cpe03g00246 Cpe-Chr3:1228923 Cpe08g01036 Cpe-Chr8:7953089 6.51E-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49904 PF00847 AP2 3.20E-13 CL0081 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g01036 - - csv:101203380 251.521