Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g01046 ATGGAAATGCCCGGTAGAAGATTGAACTATACGCTTCTCAGTCAAATTCCAGATGACCAAAACAGTGGTGGTCCTGTCAGAGCTTCGTCATCGTTGATCGAATTATCATCAGGAGAGGGGAAGAACGATAAGAGGAAGTTGGAAAGAGGATTGGATTGGGAAGCTGGTGGTGATCACAGGGCGAGCCAGCAGCCGCAGGTGAATTGGATCGGCAATATGTACTCAGCCTTTGGTTTGCAGAGGCAGTCCAGTGGAAGCAGCTTTGGAGAGAGCTCGATATCCGGGGAGTATTATGCACTGACACCATCGACTACAGTGGCTAATGAGACGGATGATGTGCTTAGGATTGGAGGCGATTCAAGAGCTCAGGTAGCCGGGACTGGAGGATCCTCTGGTAAGAGCTGGGCGCAACATACGGAGGAGAGTTATCAACTGCAGTTGGCATTGGCGCTCCGGCTTTCCTCAGATGCGACTTGTGCTGATGATCCTAATTTCTTAAATCCATTTCAGGATGATTCAGCTTTAAGGAGGTCGATTAGCTCTGCTGAGGCTGTGTCACATCGATTTTGGGTGAATGGCTGTCTATCATACTTTGACAAAATTCCTGATGGGTTTTATCTAATCCATGGAATGGATCCATATGTATGGACTTTGTGCACCAGCCTGCCTGATAATGATCGCATGCCATCAATTGAATCTCTAAAGTCTGTTGATCCTAGCACAGATTCTTCAATTGAAGTTGTTTTGATTGATCAGCGCACTGATCCCAACTTAAAAGACCTCCAAAATCGGGTCCGAAGCATTTCTTGCAGCTCTATAACCACAAAAGAGGTTGTAGACCTGCTTGCAAAACTCGTCTGTAGGAGTTTGGGTGGCTCGGTTTCTGGAGAAGATGTGTTGGTGCCCAGCTGGAAGGAGTGCAGTAATAACTTGAAGGAGACCTTAGGCTCTGTGGTTGTTCCTCTTGGTGCACTCTCTGTAGGACTCTGCCGGCATCGTGCTCTTCTTTTCAAAGTGTTAGCTGATACAATTGATTTACCCTGTCGAGTAGCCAAGGGCTGTAAATATTGCTCGTGCCATGATTCTTCTTCTTGTCTTGTGCAGTTTGGGTTTGACAAGGAGTATCTGGTTGACTTAATTGGTAATCCTGGTTGCTTATATGAGCCTGATTCCTTACTCAATGGTCCCTCCTCCATTTTGATCTCCTCGCCATTGCGATTTCCACGACTAAAGCCAGTAGAGGCAGCCATTGATTTCAGGTCACTGGCTAAACAGTACTTTGCAGATTGCCAGTTACTTAATGTTGTTTTTGATGAATGTTCCTCAGAAGTTTCTGTGGATGGAGAAGATGGTGCACTTCCCTTGTATCCAGAGCAGTTTGATAGGAAGTTCACAAACAGAAGCAACCAAATGCTTGTCACTGGTGTTCATGATGAAAAATCCATTTTACTGCACGGGAAAACTTCGCAGCCTAACTCCCAAGACGGAGACTTCCAACGATTTAAACCGCTACAACCAACTATCCTGGTTGAGGATCCAATCCCACTAAAGTACAGCCGTAGAAATGTGCAGTCACCTTTTGATCTGTCCCAGCCAATGATGGATTTTACTATGGACGTAAGGTTTGCGCAGGGAGGTCAGCTAATACCAAACACTCGGAGTAAAACACTTCCCCTTGGTGCAGAGGATTTGGACATTCCATGGGAGGATCTTGTTTTAAAAGAAAGAATTGGAGCAGGTTCTTTTGGAACTGTACATCGTGCTGATTGGCATGGATCGGAAGTTGCTGTGAAGATCCTCACAGAACAAGACTTCCATCCTGAACGTGTTAATGAGTTTCTGAGAGAGGTTGCTATTATGAAATCCTTGCGACATCCTAACATTGTACTGTTTATGGGTGCCGTGACCAAGCCACCAAACCTGTCCATTGTCACTGAATATCTATCGAGAGGTAGCTTGTATAGGCTTTTGCACAAGTCAGGTGTTAAAGACATAGATGAAACACGTCGGATAAATATGGCTTATGATGTGGCAAAGGGAATGAACTATCTCCATAGACGTGACCCTCCAATTGTTCATCGTGATTTAAAATCACCAAATCTTTTAGTCGACAAGAAGTATACAGTAAAGGTTTGTGATTTTGGTCTCTCCCGCTTAAAGGCACGCACATTTCTTTCATCAAAATCCGCGGCTGGAACAGTTGTTGCAGCTGTTGGATTTAAGTGCAAAAGGCTTGAAATCCCACGTAATGTAAATCCCAAATTGGCTTCCTTAATAGTGGCTTGCTGGGCCGATGAGCCGTGGAAACGTCCATCTTTCTCCAGCATAATGGAAACCTTGAAGCCAATGACTAAACAAGCACCATCTCAACAAGGCCGTGCAGACACACTCTCAGTTATGTGA 2403 45.11 MEMPGRRLNYTLLSQIPDDQNSGGPVRASSSLIELSSGEGKNDKRKLERGLDWEAGGDHRASQQPQVNWIGNMYSAFGLQRQSSGSSFGESSISGEYYALTPSTTVANETDDVLRIGGDSRAQVAGTGGSSGKSWAQHTEESYQLQLALALRLSSDATCADDPNFLNPFQDDSALRRSISSAEAVSHRFWVNGCLSYFDKIPDGFYLIHGMDPYVWTLCTSLPDNDRMPSIESLKSVDPSTDSSIEVVLIDQRTDPNLKDLQNRVRSISCSSITTKEVVDLLAKLVCRSLGGSVSGEDVLVPSWKECSNNLKETLGSVVVPLGALSVGLCRHRALLFKVLADTIDLPCRVAKGCKYCSCHDSSSCLVQFGFDKEYLVDLIGNPGCLYEPDSLLNGPSSILISSPLRFPRLKPVEAAIDFRSLAKQYFADCQLLNVVFDECSSEVSVDGEDGALPLYPEQFDRKFTNRSNQMLVTGVHDEKSILLHGKTSQPNSQDGDFQRFKPLQPTILVEDPIPLKYSRRNVQSPFDLSQPMMDFTMDVRFAQGGQLIPNTRSKTLPLGAEDLDIPWEDLVLKERIGAGSFGTVHRADWHGSEVAVKILTEQDFHPERVNEFLREVAIMKSLRHPNIVLFMGAVTKPPNLSIVTEYLSRGSLYRLLHKSGVKDIDETRRINMAYDVAKGMNYLHRRDPPIVHRDLKSPNLLVDKKYTVKVCDFGLSRLKARTFLSSKSAAGTVVAAVGFKCKRLEIPRNVNPKLASLIVACWADEPWKRPSFSSIMETLKPMTKQAPSQQGRADTLSVM 800
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7996171 8004227 - Cp4.1LG08g10390.1 Cpe08g01046 474012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g01046 800 Pfam Ethylene-responsive protein kinase Le-CTR1 182 386 - -
Cpe08g01046 800 SMART serkin_6 571 784 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe08g01046 800 PANTHER MAP KINASE KINASE KINASE-LIKE PROTEIN 733 791 - -
Cpe08g01046 800 PANTHER MAP KINASE KINASE KINASE-LIKE PROTEIN 123 733 - -
Cpe08g01046 800 CDD STKc_MAP3K-like 577 780 - -
Cpe08g01046 800 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 733 791 - -
Cpe08g01046 800 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 123 733 - -
Cpe08g01046 800 SUPERFAMILY Protein kinase-like (PK-like) 555 780 IPR011009 -
Cpe08g01046 800 ProSiteProfiles Protein kinase domain profile. 571 800 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe08g01046 800 Pfam Protein tyrosine and serine/threonine kinase 572 721 IPR001245 GO:0004672|GO:0006468
Cpe08g01046 800 MobiDBLite consensus disorder prediction 15 46 - -
Cpe08g01046 800 ProSitePatterns Serine/Threonine protein kinases active-site signature. 691 703 IPR008271 GO:0004672|GO:0006468
Cpe08g01046 800 Gene3D Transferase(Phosphotransferase) domain 1 650 735 - -
Cpe08g01046 800 Gene3D Transferase(Phosphotransferase) domain 1 736 795 - -
Cpe08g01046 800 ProSitePatterns Protein kinases ATP-binding region signature. 577 598 IPR017441 GO:0005524
Cpe08g01046 800 MobiDBLite consensus disorder prediction 15 37 - -
Cpe08g01046 800 Gene3D Phosphorylase Kinase; domain 1 564 649 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe03g00237 Cpe08g01046 CCT
Cpe08g01046 Cpe10g00265 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00479 Cpe-Chr2:2721160 Cpe08g01046 Cpe-Chr8:7996171 9.19E-154 dispersed
Cpe06g00457 Cpe-Chr6:2662617 Cpe08g01046 Cpe-Chr8:7996171 1.25E-154 dispersed
Cpe08g01046 Cpe-Chr8:7996171 Cpe20g00145 Cpe-Chr20:821271 7.47E-39 dispersed
Cpe10g00265 Cpe-Chr10:1584095 Cpe08g01046 Cpe-Chr8:7996171 0 wgd
Cpe03g00237 Cpe-Chr3:1177932 Cpe08g01046 Cpe-Chr8:7996171 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62562 PF14381 EDR1 4.00E-78 CL0125 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g01046 K14510 - csv:101208452 1368.99