Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe08g01057 | ATGGAGTGGGCCACCGGAAGTTTCAGACCCTTTGTTTCTCGAGCGCCGGAATCTTCATTTGGGTTTCTCTATAACTATAATCTTGAACAGTATCAGGGCATAGATGTGAAGCATTCGGCGATGGCGGGGGCGTCGGAGACGGTATTGCAAGGGCTGGTTCCAGGGATGGACATGAACAGCTATGGAAATTTGGAGAAGAAGAAGCGGCTGAGCAGCGAGCAGCTCGACTCACTCGAACAAAGCTTCCAGGAGGAGATCAAGCTCGATCCCGACCGGAAGCAGAAGCTGGCCAAGGAGCTTGGTCTGCAGCCGCGCCAGATCGCCGTTTGGTTCCAGAACCGCCGTGCGCGGTGGAAGGCGAAGCAACTCGAGCACCTCTACGACACTCTCAAACAAGAGTTCGATGCCATTTCTAGAGAGAAACATAAGCTTCAAGAGGAGGAGACGGTGGAGAGCACCTCGGTCGGAGCTGGCTGCTCGAGCAAGCCGAGTGCGGCGGCGGTGGCGGCAGCAGCAGCAAATCAATACCCGACGCCACCGGAGCAGTGCAACTATGTGTTCAACACTGAGGAGTACAACCCCATGTCTCCAACATTCTGGGGGACACTCCCATCGTCTTATCATCCTCAG | 630 | 55.4 | MEWATGSFRPFVSRAPESSFGFLYNYNLEQYQGIDVKHSAMAGASETVLQGLVPGMDMNSYGNLEKKKRLSSEQLDSLEQSFQEEIKLDPDRKQKLAKELGLQPRQIAVWFQNRRARWKAKQLEHLYDTLKQEFDAISREKHKLQEEETVESTSVGAGCSSKPSAAAVAAAAANQYPTPPEQCNYVFNTEEYNPMSPTFWGTLPSSYHPQ | 210 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 8066394 | 8068079 | + | Cp4.1LG08g10530.1 | Cpe08g01057 | 474023 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe08g01057 | 210 | Coils | Coil | 61 | 81 | - | - | |
| Cpe08g01057 | 210 | ProSitePatterns | 'Homeobox' domain signature. | 96 | 119 | IPR017970 | GO:0000981|GO:0006355 | |
| Cpe08g01057 | 210 | CDD | homeodomain | 66 | 122 | IPR001356 | GO:0003677 | |
| Cpe08g01057 | 210 | Coils | Coil | 113 | 147 | - | - | |
| Cpe08g01057 | 210 | ProSiteProfiles | 'Homeobox' domain profile. | 61 | 121 | IPR001356 | GO:0003677 | |
| Cpe08g01057 | 210 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN | 1 | 163 | IPR045224 | GO:0003700 | |
| Cpe08g01057 | 210 | Pfam | Homeodomain | 66 | 119 | IPR001356 | GO:0003677 | |
| Cpe08g01057 | 210 | SUPERFAMILY | Homeodomain-like | 55 | 123 | IPR009057 | - | |
| Cpe08g01057 | 210 | Gene3D | - | 59 | 128 | - | - | |
| Cpe08g01057 | 210 | PANTHER | HOMEODOMAIN-LIKE PROTEIN-RELATED | 1 | 163 | - | - | |
| Cpe08g01057 | 210 | PRINTS | Lambda-repressor HTH signature | 92 | 101 | IPR000047 | GO:0003677 | |
| Cpe08g01057 | 210 | PRINTS | Lambda-repressor HTH signature | 101 | 117 | IPR000047 | GO:0003677 | |
| Cpe08g01057 | 210 | SMART | HOX_1 | 63 | 125 | IPR001356 | GO:0003677 |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cpe03g00223 | Cpe08g01057 | CCT | |
| Cpe08g01057 | Cpe19g00447 | CCT | |
| Cpe08g01057 | Cpe10g00259 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe08g01057 | Cpe-Chr8:8066394 | Cpe10g00259 | Cpe-Chr10:1554694 | 1.78E-40 | dispersed | |
| Cpe10g00258 | Cpe-Chr10:1547782 | Cpe08g01057 | Cpe-Chr8:8066394 | 4.62E-48 | wgd | |
| Cpe19g00447 | Cpe-Chr19:3966973 | Cpe08g01057 | Cpe-Chr8:8066394 | 1.61E-39 | wgd | |
| Cpe03g00223 | Cpe-Chr3:1113229 | Cpe08g01057 | Cpe-Chr8:8066394 | 6.18E-137 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 49910 | PF00046 | Homeodomain | 1.20E-17 | CL0123 | Cpe | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe08g01057 | - | - | csv:101221983 | 381.719 |