Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g01058 ATGGTTCTCAAGTTCGTCAAAATACTTCCATCTCTATTTTCATGTGTTCTTAGATCTGATGCCATATCCTCTGTTTTCGTTCTATATGTCGGCGTGTTTTTGTGGTTCTGTTTTCGCATTTTTACTTTACTTATGAGGCGTAATTACGGTTGCTATTTGCAACATGTCTGTGCACTGAGGACTGAGCTTTGTCGATTCAGTGGAGCCAAGATATACCCAGGGAGAGGCATCAGATTCATCCGGGCCGATTCTCAGGTGTTTCTCTTCGCCAACTCAAAATGCAAGAGGTACTTCCACAACCGGCTGAAGCCATCAAAGCTTACCTGGACAGCCATGTATAGGAAGCAGCACAAGAAGGACATTGCTCAAGAGGCTGTAAAGAAGAGGAGACGTGCCACCAAGAAGCCCTACTCCAGGTCCATTGTTGGTGCAACATTGGAAGTCATCCAAAAGAAGAGAGCCGAAAAGCCAGAAGTGCGTGATGCTGCTAGAGAAGCTGCTCTCCGTGAAATTAAGGAAAGGATTAAGAAAACCAAGGACGAAAAGAAGGCCAAGAAGGCAGAAGTGATGGCCAAGTCACAGAAGGCGCCAGGTAAGGGTAACGTTCCTAAGGGAGCTGCACCCAAGGGTCCAAAGCTGGGTGGTGGCGGTGGAAAGCGTTGA 663 47.21 MVLKFVKILPSLFSCVLRSDAISSVFVLYVGVFLWFCFRIFTLLMRRNYGCYLQHVCALRTELCRFSGAKIYPGRGIRFIRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKDEKKAKKAEVMAKSQKAPGKGNVPKGAAPKGPKLGGGGGKR 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 8069854 8071984 - Cp4.1LG08g10620.1 Cpe08g01058 474024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g01058 220 ProSitePatterns Ribosomal protein L24e signature. 66 83 IPR023442 -
Cpe08g01058 220 Pfam Ribosomal protein L24e 60 123 IPR000988 -
Cpe08g01058 220 Gene3D Ribosomal protein L24e 59 120 IPR038630 -
Cpe08g01058 220 SMART 4TRASH 64 102 IPR011017 -
Cpe08g01058 220 PANTHER 60S RIBOSOMAL PROTEIN L24 53 220 - -
Cpe08g01058 220 Gene3D - 125 194 - -
Cpe08g01058 220 Coils Coil 168 195 - -
Cpe08g01058 220 PANTHER 60S RIBOSOMAL PROTEIN L24 53 220 IPR000988 -
Cpe08g01058 220 MobiDBLite consensus disorder prediction 174 220 - -
Cpe08g01058 220 MobiDBLite consensus disorder prediction 174 192 - -
Cpe08g01058 220 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 62 114 - -
Cpe08g01058 220 CDD Ribosomal_L24e_L24 59 112 IPR000988 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe08g01058 Cpe19g00446 CCT
Cpe08g01058 Cpe19g00446 ECH
Cpe08g01058 Cpe10g00257 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00114 Cpe-Chr6:559778 Cpe08g01058 Cpe-Chr8:8069854 6.54E-18 transposed
Cpe10g00257 Cpe-Chr10:1544459 Cpe08g01058 Cpe-Chr8:8069854 3.37E-84 wgd
Cpe19g00446 Cpe-Chr19:3965006 Cpe08g01058 Cpe-Chr8:8069854 5.44E-86 wgd
Cpe03g00222 Cpe-Chr3:1108259 Cpe08g01058 Cpe-Chr8:8069854 1.21E-49 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g01058 K02896 - twl:120012240 234.187