Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g01059 ATGGACAAAGCTTCCAAGCATCAGGTATCATTGAGGGGAGCGAGTGCAAAAGAAATTACGAGGGATGCTCTTGTTCAGAAGGTTATCCAGGAGAGAGAGCTACGTCAATATGCAAGAAAAGCTGCAGCTTCGGCTCTCTTTATTCAGAGAGTATGGAGGCGCTACAGAGTGACTAAGATAGCTGCTTTGCAGCTTCAAGAAAGTTGGGAAGAGTTGGTGAATAATCGTTCTGGTGCTCTGGCTGGCACGTTCATTTCCTATAATATTTTGAGACCGTTTCTCTTCTTTATCTCATCTTTTCTGAAACGACCCCAAAATATCCAGACCAGAGATATAGACTGTATGAAGAATTGCTTTACAATCTTGTTTGAAAGCATCAATTCTACCGAATCAAAGAACAACTTTTGCTCCTTGGCCACTGGTACATCTGAAGAAAGAAGAATATGGACTTACCAATCAAGGAAACTTATTTCTGTATGCTTATTTATTCTTGTTCATTTCGACAAGTTGCAAGCAAAGGAGCAAAAAATTATTGTTACAACCTCTTTAGCCATGCGCTTGGTAGTCGTCTTCACTGATTATAATGGGTGGAAGAATGTAAATGAGAATAATCGTTTTGATACAGAAGCAGCATTGAAGGATTTAGTTCATTATCTAGGAACTTCTGAAAGTGGCCTTTACCTATCCGTCAGAAAATACATGTGTAAATTGAGTGTTATCCAATCTTCACGGACCACCAGTACCATCCAGACAAATGATTTATTTGTTATTACTGTGAGTGCAATAACTTTAGCTTTACGACCATTTCGTCTAATGAATTTTGATGCAATTGGCACTACTTCGTGGGAAGGGCATCATGTGGCTGAACAGTTCTGTCTGTTTCTACTTACAATTCCCGAACTTGTTCAAAATCTGCCTCAAGTTCTTGTGCCAGCTGTAAAGCATCGATCTATCTTGCTACCATGCTTCTGGACTCTATTGGCCAAGAAAGAGACAATTTTATTGGGAATGTCTGACCTGGATCGGTTATCAGTTGATTGTGGCTCTAAGGTTGTTCCGGCAGTTGGATGGGCTCTTGCAAACATTATATGTCTGGCAGCAGGGACTGAAACTAAGGCCACGGATTCTGGTTGGTTCAAGCAGAGTTTAGATTATGTGTTATATGTTCGTGTGGGTATCACTTTGGCAGAAAGACTTTTGGCTTTGATTGGGGATTTTGGGTGTGGTAGAAAGGAGAATCAAGATATCCAAAGCGAAAATTTAACTTCTTATGAACCCTCTGATGCAGCTGTTTTCAAGAATGAAATGGCATCCATGCCCTTAAGCACATTGCCCATTGATATGTTTAGGCCTATTTGTGAACAGAGGCATCTCACAGATCTTTTGACAATAGTAAATACAGATCTTCACTCCGAAAAAAGTACTGCACAGTCAAATAATATAGACTGTATGAAAAGCTTGAAACTGATCGATATATCATACTTTTACATGTACATGCTCAGAATATTTTCACTTTTGAATCCACCCGTTGGATCCTTACCTGTTCTTAACATGTTATCTTTTACTCCTGGGTTTCTTGTTGATTTGTGGGGAGTGTTAGAAAGTTCCCTTTTCCCCAGTGATGCTGATGAAGCTGAAGGTCCCTTTCCTGGCTCAAGTAAAATATCAAGTAAAAAGAAAGATGAAGTTTTTGGCAAAAAGCCAAAGCAAGTCAACAGGGATGGAAATAGTAAGAGGGTAACTGTCTTTCATAAGTTCACGAGCAAGTCACAACTGGGCAGTGATCATATGGACTCGGTTAAGGATCAATCTAGTTCAAGACAAGGGGATGATGACTTGCGTGATGTTCCGTTCAGGCTGGAGCAGCAAAGGAAACTTGCATCAATGCTTAATACACTTGTGTATAATGGCTTGTCCCATGGTACTGGTCAGCAGAACACATCCCTTATGGAATCTGCAATCAGGTGCTTGCATCTGATGTATGAGAGAGATTGCAGACACCAGTTTTGTCCTCCTACGCTATGGCTTGCACCTGCTAGAACAAGTAGACCACCTGTTGCAGTTGCTGCAAGAACTCACGAAGCTTTATTAGCTAACCTACGAGCAGATGATAGTTTAACAGTTCCAACTGTAGGTTCGATTATAGCTACCACACCGCATGTGTTCCCATTCGAGGAAAGAGTTGAAATGTTCAGGGAGTTTGTCAAGATGGACAAAGTCTCCCGAAAAATGGCAGGTGAAGTTGGTGGACCTGGGTCACGATCATTTGAAATTGTAGTTCGTCGCAGCCATGTTATTGAAGATGGATTCAGACAGTTAAATTCCCTTGGGTCAAGGCTAAAATCAGCTATTCATGTTTCATTCGTTAGTGAATGTGGCCTTCCCGAGGCTGGCCAAGACTGTGGTGGATTATCCAAAGAGTTTTTAACTGATATAGCCAAAGCAGCATTTTCTCCTGAATATGGGCTGTTCTGTCAAACGTCTACTGAAGACAGGCTTCTTATCCCTAATGCATCAGCAAGATATCTCGACAACGGCATCCAGATGATTGAGTTTCTTGGTAGAGTTGTTGGGAAGGCTCTCTATGAAGGAATATTGCTTGATTACTCATTTTCACATGTTTTTGTTCACAAGTTGTTAGGCCGGTATAGCTTCCTTGACGAGTTATCGACACTTGATCCAGAACTATACCGGAATCTCATGTATGTCAAGTCTTATGAGGGCGATGTCAAAGAACTCTCGCTGGATTTCACTGTTACTGAAGAATCATTTGGCAAGCGACATGTTATTGAGCTTATACATGGTGGCAAGGATGTTTCTGTTACAAATGAGAATAAGATGCAGTATGTTCACGCCATTGCTGATTATAAACTTAATCGACAGATACTGCCTTTTTCAAACGCATTCTATAGGGGTTTGACTGATCTTGTATCACCGTCGTGGTTGAAGTTATTTAGTGCAAGTGAATTCAATCAGTTGCTTTCCGGTGGAAACCACGACATTGACGTTGATGATTTGAGGAATAATACACGATATACAGGTGGTTACACAGAGGGCAGCCGAACTATTAGTATTTTCTGGGAGGTTATTAAGGGGTTTGAACCAAAAGATCGTTGTTTGCTTCTTAAATTTGTCACTAGTTGTTCTCGAGCTCCATTACTTGGATTCAAGTACCTGCAACCAGCTTTTACCATTCATAAGGTCTCATGTGATGTACCGATATGGGCTTCACTAGGAGGACAGGATGTCGAACGCCTTCCGACAGCTTCCACTTGCTATAATACTCTCAAGCTCCCTACATATAAACGTTCGAGCACCTTGAGATCAAAACTTCTCTATGCGATCAATTCCAACTCCGGATTTGAACTTTCTTGA 3375 41.07 MDKASKHQVSLRGASAKEITRDALVQKVIQERELRQYARKAAASALFIQRVWRRYRVTKIAALQLQESWEELVNNRSGALAGTFISYNILRPFLFFISSFLKRPQNIQTRDIDCMKNCFTILFESINSTESKNNFCSLATGTSEERRIWTYQSRKLISVCLFILVHFDKLQAKEQKIIVTTSLAMRLVVVFTDYNGWKNVNENNRFDTEAALKDLVHYLGTSESGLYLSVRKYMCKLSVIQSSRTTSTIQTNDLFVITVSAITLALRPFRLMNFDAIGTTSWEGHHVAEQFCLFLLTIPELVQNLPQVLVPAVKHRSILLPCFWTLLAKKETILLGMSDLDRLSVDCGSKVVPAVGWALANIICLAAGTETKATDSGWFKQSLDYVLYVRVGITLAERLLALIGDFGCGRKENQDIQSENLTSYEPSDAAVFKNEMASMPLSTLPIDMFRPICEQRHLTDLLTIVNTDLHSEKSTAQSNNIDCMKSLKLIDISYFYMYMLRIFSLLNPPVGSLPVLNMLSFTPGFLVDLWGVLESSLFPSDADEAEGPFPGSSKISSKKKDEVFGKKPKQVNRDGNSKRVTVFHKFTSKSQLGSDHMDSVKDQSSSRQGDDDLRDVPFRLEQQRKLASMLNTLVYNGLSHGTGQQNTSLMESAIRCLHLMYERDCRHQFCPPTLWLAPARTSRPPVAVAARTHEALLANLRADDSLTVPTVGSIIATTPHVFPFEERVEMFREFVKMDKVSRKMAGEVGGPGSRSFEIVVRRSHVIEDGFRQLNSLGSRLKSAIHVSFVSECGLPEAGQDCGGLSKEFLTDIAKAAFSPEYGLFCQTSTEDRLLIPNASARYLDNGIQMIEFLGRVVGKALYEGILLDYSFSHVFVHKLLGRYSFLDELSTLDPELYRNLMYVKSYEGDVKELSLDFTVTEESFGKRHVIELIHGGKDVSVTNENKMQYVHAIADYKLNRQILPFSNAFYRGLTDLVSPSWLKLFSASEFNQLLSGGNHDIDVDDLRNNTRYTGGYTEGSRTISIFWEVIKGFEPKDRCLLLKFVTSCSRAPLLGFKYLQPAFTIHKVSCDVPIWASLGGQDVERLPTASTCYNTLKLPTYKRSSTLRSKLLYAINSNSGFELS 1124
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 8072529 8084006 + Cp4.1LG08g10510.1 Cpe08g01059 474025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g01059 1124 Gene3D Hect, E3 ligase catalytic domain 882 961 - -
Cpe08g01059 1124 MobiDBLite consensus disorder prediction 555 576 - -
Cpe08g01059 1124 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 3 1124 - -
Cpe08g01059 1124 SMART hect_3 774 1124 IPR000569 GO:0004842
Cpe08g01059 1124 MobiDBLite consensus disorder prediction 590 615 - -
Cpe08g01059 1124 ProSiteProfiles HECT domain profile. 780 1124 IPR000569 GO:0004842
Cpe08g01059 1124 CDD HECTc 756 1122 IPR000569 GO:0004842
Cpe08g01059 1124 SUPERFAMILY Hect, E3 ligase catalytic domain 755 1117 IPR035983 GO:0004842
Cpe08g01059 1124 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 3 1124 IPR044611 GO:0000209|GO:0061630
Cpe08g01059 1124 MobiDBLite consensus disorder prediction 543 576 - -
Cpe08g01059 1124 Pfam HECT-domain (ubiquitin-transferase) 811 1124 IPR000569 GO:0004842
Cpe08g01059 1124 MobiDBLite consensus disorder prediction 600 615 - -
Cpe08g01059 1124 Gene3D Hect, E3 ligase catalytic domains 758 996 - -
Cpe08g01059 1124 Gene3D Hect, E3 ligase catalytic domain 999 1123 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g01059 Cpe-Chr8:8072529 Cpe12g00338 Cpe-Chr12:2251607 9.72E-75 dispersed
Cpe08g01059 Cpe-Chr8:8072529 Cpe08g00836 Cpe-Chr8:6644104 1.70E-55 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g01059 K10588 - csv:101205886 1910.19