Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g01060 ATGGCGAATACAACTTCAAAACCCGAGAATTTGGAGCCGACCCTCTTGAAAATTGGCATTCCTCTAGCTCTATCAGCAGCTGGTGGAGTATGTTGTGGCATAATGATGGCAAGAAGTTCATTTCCCTCCTTAAATCCACTCAAACGCATATCAAAACTCATTAAGAATGAGAACTTTGACAGCCAAAATCATTCAGCTCCACTTCCTTTGAAGCAAAAAGAAACTTCACCCAAGATTGAGGAAGTTCTTTTAGGCTTAAAAAACAGAGTTGAAGATCTTGAAAGAAAGGAATTGGGCATAGAGAAGCAGTTCATTTGGTACCAAAATTTGAAAGAGAAGGAAGCTTTGCTGATGGAGTTGAAGAACACATTGGTTTTGGACATGGCTCATATCAGGTTCTTGGAGAAGGAGATTTTGCTAATGGAAGAAGAAAACAAAAGGTTTGAGAGTTTGGTGACTGAATATTTGGGAGTTTCAGAGAAGTTTGAAGGCCAAAAACCAGAGAACAGGTTACTTGAGAGAGAAGTAAAGAAAGTGAAGAAGAGATTGAAGGAACAATCAAAGATGATAAGAGAGAAGAATTTGAAGATTGAAGAGAGTAGAACAGAGTTTTGGAGAAACAATGAAGAAATGGAAAGGAAGAAGAGGATGATTGAGAAATTGAGGAATGAACTAAGAGACCTCAAAATGCAAATGGAGAACAATGCTTCACCTTCATCATCATATAAGATTGAAGAAGAAAAAGAAGTGACAATGAAGGATGTTAGCAAGCTTTCAATTAACCATGAACAAGAACAACAAGAATATAAAGAAAACCATAAGGATTTGGATCAAAAGGAATCGTCTCCTAATAAAACTACAAGACCAAAGCTCACGGATGTCAACAAGCTTTCGATTGGAAACCATGAACAAGAACAACAAGAACAACAAGAACAAGAACAACAAGAACAGAAAGAAAATCATAAGGATTTGGCTCAAAAGGAATCCTCTTCTGATAAAATTAAATGTACAAGGCCAAGGCTTCTTCGAAGGATAAGCGATTCTGGGAGTAGTGAAATGAATCCAAAGATGATGAAAAAAATTAGACACAATAAGAACCTCTAA 1104 36.78 MANTTSKPENLEPTLLKIGIPLALSAAGGVCCGIMMARSSFPSLNPLKRISKLIKNENFDSQNHSAPLPLKQKETSPKIEEVLLGLKNRVEDLERKELGIEKQFIWYQNLKEKEALLMELKNTLVLDMAHIRFLEKEILLMEEENKRFESLVTEYLGVSEKFEGQKPENRLLEREVKKVKKRLKEQSKMIREKNLKIEESRTEFWRNNEEMERKKRMIEKLRNELRDLKMQMENNASPSSSYKIEEEKEVTMKDVSKLSINHEQEQQEYKENHKDLDQKESSPNKTTRPKLTDVNKLSIGNHEQEQQEQQEQEQQEQKENHKDLAQKESSSDKIKCTRPRLLRRISDSGSSEMNPKMMKKIRHNKNL 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 8084489 8086095 + Cp4.1LG08g10560.1 Cpe08g01060 474026

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g01060 367 MobiDBLite consensus disorder prediction 229 250 - -
Cpe08g01060 367 Coils Coil 83 103 - -
Cpe08g01060 367 Coils Coil 299 328 - -
Cpe08g01060 367 MobiDBLite consensus disorder prediction 265 286 - -
Cpe08g01060 367 MobiDBLite consensus disorder prediction 306 342 - -
Cpe08g01060 367 MobiDBLite consensus disorder prediction 265 367 - -
Cpe08g01060 367 Coils Coil 259 279 - -
Cpe08g01060 367 Coils Coil 169 235 - -
Cpe08g01060 367 PANTHER PROTEIN CHUP1, CHLOROPLASTIC 1 362 IPR040265 -
Cpe08g01060 367 PANTHER CHUP1-LIKE PROTEIN 1 362 - -
Cpe08g01060 367 MobiDBLite consensus disorder prediction 287 305 - -
Cpe08g01060 367 Coils Coil 131 151 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g01060 - - - cpep:111800650 673.315
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00221 Cpe-Chr3:1105419 Cpe08g01060 Cpe-Chr8:8084489 6.83E-89 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g1080 . . . . . . . . Cmo06g00424 Cmo14g00245 . . . . . . Cpe08g01060 . . . . . . . . . . . . . . . . Cone13ag1228 . . . . Cme04g02453 . . . . . . . . Sed02g0586 . . . . . Car14g00232 . . Bhi11g02010 Tan08g1801 Cmetu04g2072 . Hepe05g0320 . . . . . . . . . Lsi03g01956 Csa03g03356 Chy04g01987 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014217 0 1 0 0 0 1 1 1 1 0 0 1 0 1 1 2 1 1 2 1 1 2 1 1 1 0 0 0 1 1 23
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe08g01060 Cpe_Chr08 FPKM 8.789906 9.436498 4.356925 3.568418 11.700176 9.766972 11.897559 10.600833 10.975646 10.276378