Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g01084 ATGTCACAAGATTCCGAGGAGATAAAGACGACTGAGCAGTGGAAATGGTCCGAAATGCAAGGCCTTGAGCTCGTCTCTTCTGATCTTCCTCCTCCTCCTCCTCCTCCTCCCCCAACAGCTAAACACACAGACCCTGAAGACCTCAGACCCAAAGAGGAGGCTCAAGACGGATTTGGCAGAGCCACAAACGGAGATATGGAGTCTACTAGTGATTCCAAGAAGGAAAACGGCGGTGGCACCAGTGGGGAGAAGCCTGAGGCTGTCACCGCCGTTGGGTTTGGGGAGCTCTTCAGATTCGCCGATGGGTTGGATTACGTTTTGATGGCAATTGGGTCGGTCGGAGCCCTTGTCCATGGTTGTTCTCTGCCTCTGTTTCTTCGATTCTTCGCCGATCTTGTTAACTCTTTTGGGTCTTACGCCAATGATGTGGATAAAATGATGCAGGAGGTTTTGAAGTATGCATTCTACTTTCTCGTGGTTGGAGCTGCAATATGGGCGTCATCCTGGGCAGAGATTTCGTGTTGGATGTGGACCGGCGAGCGGCAATCCACAAAGATGAGGATCAAGTACCTAGAAGCAGCACTGGACCAGGACATCCAGTATTTTGATACCGAGGTGCGAACATCTGATGTCGTTTTCGCCATCAACACTGATGCAGTGATGGTCCAAGACGCCATTAGTGAGAAGCTGGGCAACTTCATCCACTATATGGCAACATTTGTTTCTGGATTCGTTGTGGGTTTCACTGCGGTGTGGCAATTGGCTTTAGTAACCCTTGCGGTGGTTCCTCTGATTGCTGTAATCGGCGGCATCTACACCACCACAATAGCGAAGCTCACTGCCAAGACCCAGGAGGCTCTTTCAGAAGCTGGAAATATTGTCGAACAGACAATAGTTCAAATTCGAGTTGTCTTTGCTTTCGTCGGCGAATCAAGAGCATTACAGAGGTACTCCTCCGCATTGAAGATTTCTCAAAGAATAGGTTACAAGAGTGGGTTCTCCAAGGGTATGGGATTGGGCGCCACTTACTTTGTCGTCTTCTGCTGTTACGCTCTTCTGCTCTGGTACGGAGGTTATCTTGTTAGACACCATGCCACCAATGGCGGTCTCGCCATTGCCACCATGTTTGCAGTGATGATTGGCGGACTGGCATTGGGGCAATCTGCTCCGAGCATGAGTTCATTCGCAAAGGCTAAAGTTGCAGCTGCTAAAATCTACCGTATAATCGACCATAAGCCCACTCTAAACCGCAACAACGAATCTGGTTTGGAATTAGAGTCAGTTTCAGGACTGGTTGAGCTAAAAAACGTAGATTTCTCATACCCATCAAGACCAGATGTAAGAATCCTCAACAATTTCTCCCTAACTGTCCCTGCCGGAAAGACTATAGCTCTGGTCGGTAGCAGTGGCTCCGGCAAGAGTACCGTCGTCTCCCTCATTGAAAGATTCTATGACCCCATGTCAGGGGAATGGAATATTTTATTTCTTGTAACAAGGCCTTCAAGTGCCAGGAACTCGGTGAGCTCCCCCATAATTGCACGGAATTCTTCCTATGGACGATCGCCATATTCTCGTCGGTTATCTGACTTCTCCACATCCGATTTTAGCCTCTCTCTGGATGCTTCACTTCCCAATTACAGGCTTGAAAAACTTGCCTTTAAGGAGCAGGCCAGTTCCTTTTGGCGTCTTGTGAAAATGAATTCTCCTGAATGGCTCTATGCATTACTTGGTTCTGTTGGCTCTGTTGTTTGTGGGTTTTTAAGCGCCTTCTTCGCATACGTTCTAAGTGCTGTTCTCAGTGTCTATTATAATCCAGACCATGCTTTCATGAGCAGAGAAATAATAAAGTACTGCTATCTACTAATCGGACTTTCATCAGCTGCTCTTCTCTTCAATACAATACAGCATTTCTTCTGGGATATTGTGGGAGAGAATCTCACCAAACGTGTAAGAGAGAAGATGCTTACAGCAGTACTGAAAAATGAAATGGCATGGTTTGACCAGGAAGAAAATGAGAGTGCCAAGATTGCTGCAAGGCTGGCCCTCGACGCGAACAACGTCAGATCAGCTATTGGAGATAGGATTTCTGTGATTGTACAGAACACTTCACTGATGCTAGTTGCATGCACTGCCGGATTTGTTTTGCAGTGGCGCCTCTCTCTTGTCCTTGTAGCCGTCTTCCCTGTGGTTGTTGCGGCCACTGTCTTACAGAAAATGTTCATGACTGGTTTTTCAGGAGACCTTGAGGCCAACCATGCCAAGGCCACACAACTAGCAGGGGAGGCCATTGCCAATGTAAGGACTGTCGCTGCATTCAACTCAGAGGAAAAGATTGTCAGACTTTTCTCAACCAACCTTGAGATCCCACTACGACGCTGCTTTTGGAAGGGACAGATTGCCGGTAGTGGATTTGGCATTGCTCAGTTCTCTCTTTATGCTTCCTATGCTCTAGGTCTTTGCTGA 2463 47.62 MSQDSEEIKTTEQWKWSEMQGLELVSSDLPPPPPPPPPTAKHTDPEDLRPKEEAQDGFGRATNGDMESTSDSKKENGGGTSGEKPEAVTAVGFGELFRFADGLDYVLMAIGSVGALVHGCSLPLFLRFFADLVNSFGSYANDVDKMMQEVLKYAFYFLVVGAAIWASSWAEISCWMWTGERQSTKMRIKYLEAALDQDIQYFDTEVRTSDVVFAINTDAVMVQDAISEKLGNFIHYMATFVSGFVVGFTAVWQLALVTLAVVPLIAVIGGIYTTTIAKLTAKTQEALSEAGNIVEQTIVQIRVVFAFVGESRALQRYSSALKISQRIGYKSGFSKGMGLGATYFVVFCCYALLLWYGGYLVRHHATNGGLAIATMFAVMIGGLALGQSAPSMSSFAKAKVAAAKIYRIIDHKPTLNRNNESGLELESVSGLVELKNVDFSYPSRPDVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPMSGEWNILFLVTRPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLDASLPNYRLEKLAFKEQASSFWRLVKMNSPEWLYALLGSVGSVVCGFLSAFFAYVLSAVLSVYYNPDHAFMSREIIKYCYLLIGLSSAALLFNTIQHFFWDIVGENLTKRVREKMLTAVLKNEMAWFDQEENESAKIAARLALDANNVRSAIGDRISVIVQNTSLMLVACTAGFVLQWRLSLVLVAVFPVVVAATVLQKMFMTGFSGDLEANHAKATQLAGEAIANVRTVAAFNSEEKIVRLFSTNLEIPLRRCFWKGQIAGSGFGIAQFSLYASYALGLC 820
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 8234339 8239185 + Cp4.1LG08g10860.1 Cpe08g01084 474050
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g01084 820 Gene3D ABC transporter type 1, transmembrane domain 95 421 IPR036640 GO:0005524|GO:0016021
Cpe08g01084 820 Gene3D ABC transporter type 1, transmembrane domain 551 820 IPR036640 GO:0005524|GO:0016021
Cpe08g01084 820 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 575 820 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cpe08g01084 820 Gene3D - 422 490 IPR027417 -
Cpe08g01084 820 PANTHER ABC TRANSPORTER B FAMILY MEMBER 1 499 819 - -
Cpe08g01084 820 Pfam ABC transporter 450 491 IPR003439 GO:0005524
Cpe08g01084 820 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 109 397 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cpe08g01084 820 PANTHER ABC TRANSPORTER B FAMILY MEMBER 1 108 490 - -
Cpe08g01084 820 MobiDBLite consensus disorder prediction 42 58 - -
Cpe08g01084 820 MobiDBLite consensus disorder prediction 27 41 - -
Cpe08g01084 820 Pfam ABC transporter transmembrane region 578 819 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cpe08g01084 820 Pfam ABC transporter transmembrane region 110 382 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cpe08g01084 820 SUPERFAMILY ABC transporter transmembrane region 96 410 IPR036640 GO:0005524|GO:0016021
Cpe08g01084 820 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 108 490 IPR039421 -
Cpe08g01084 820 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 499 819 IPR039421 -
Cpe08g01084 820 CDD ABC_6TM_Pgp_ABCB1_D1_like 108 395 - -
Cpe08g01084 820 SUPERFAMILY ABC transporter transmembrane region 562 819 IPR036640 GO:0005524|GO:0016021
Cpe08g01084 820 MobiDBLite consensus disorder prediction 1 85 - -
Cpe08g01084 820 CDD ABC_6TM_Pgp_ABCB1_D2_like 565 819 - -
Cpe08g01084 820 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 423 491 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g01084 Cpe-Chr8:8234339 Cpe13g00944 Cpe-Chr13:7948987 1.54E-17 dispersed
Cpe03g00195 Cpe-Chr3:970459 Cpe08g01084 Cpe-Chr8:8234339 1.95E-46 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g01084 K05658 - cpap:110810752 1230.31