Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe08g01101 | ATGGGTAACATTGGGAGTACCGGTTCCCATGCCCGGAGACGACACGATTCCCGTCGGGGACATCCCACTCCACCTCCACCTCCGCCGCCACAGCCCGAAATCACAAGTAATCGGTTCGTTTTCGCCGCTGCAACGCCCTACCCATCGCAATACCCTAATCATCCGAATCAAGCGCCGCCCTACTATCAGTACCCTGGTTACTTTCCGCCGCCACCTGGTCCACCTCCGTCGATGCCGATGCCCTTGCCGGCGTCTTACGACCATCAACACCGCGCTGCCCATCCCCATATGGATCCTGCGCATTGGGTCGGTGGGAGATATCCTTACGGTCCTCCTATGCCGCCCCAAACGCCCTATGTTGAGCATCAGAAGGCGGTTACCATTCGAAATGATGTTAATCTCAAGAAAGAAACTCTTAGGGTTGAGCCCGATGAAGAAAACCCCGGCCAATTCCTTGTATCTTTCTTGTTCGATGCCACCGTCGCCGGAAGTATCACCATCTTCTTCTTCGCAAAAGAAGGCGAAGATTGTAACTTGACGCCCGTAAAAGAAGACACTTTTCAACCAGTGACTGTCCATTTCGAACAAGGCCTCGGACAGAAGTACAGACAACCTTGTGGAACAGGAATAGATTTCTCAAAGTTCGAAGAGTCGGAGTTAGTGAAAGTAAATGACACAGATGTCTATCCATTAGCTGTGAAAGCCGAGGCTTCTACCGAAGGCCAAACCGGCCCCGATGGTACCGTGGTACCTGAGACCATGAATTCTCAGATAACACAGGCAGTGTTTGAGAAAGATAAAGGTGAATATCAGGTAAAAGTGTTGAAGCAAATCCTGTGGGTCAATGGTATGAGATATGAGCTGCAGGAGATCTATGGAATTGGAAATTCAGTCGAGGACGATGTCGATGGAAGCGACCCTGGAAAGGAATGTGTCATTTGCTTGTCCGAACCACGGGATACGACTGTCCTTCCCTGCCGACACATGTGTATGTGTAGTGGTTGTGCTAAGGTTTTGAGGTTCCAGACGAATCGATGCCCGATTTGCAGACAACCCGTCGATAGGCTCTTAGAGATAAGGGTCAACAATGGGGCAGAAGAATAA | 1104 | 50.54 | MGNIGSTGSHARRRHDSRRGHPTPPPPPPPQPEITSNRFVFAAATPYPSQYPNHPNQAPPYYQYPGYFPPPPGPPPSMPMPLPASYDHQHRAAHPHMDPAHWVGGRYPYGPPMPPQTPYVEHQKAVTIRNDVNLKKETLRVEPDEENPGQFLVSFLFDATVAGSITIFFFAKEGEDCNLTPVKEDTFQPVTVHFEQGLGQKYRQPCGTGIDFSKFEESELVKVNDTDVYPLAVKAEASTEGQTGPDGTVVPETMNSQITQAVFEKDKGEYQVKVLKQILWVNGMRYELQEIYGIGNSVEDDVDGSDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVDRLLEIRVNNGAEE | 367 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 8334004 | 8337590 | + | Cp4.1LG08g10950.1 | Cpe08g01101 | 474067 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe08g01101 | 367 | MobiDBLite | consensus disorder prediction | 1 | 67 | - | - | |
| Cpe08g01101 | 367 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 295 | 360 | IPR013083 | - | |
| Cpe08g01101 | 367 | MobiDBLite | consensus disorder prediction | 52 | 67 | - | - | |
| Cpe08g01101 | 367 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN-RELATED | 1 | 367 | - | - | |
| Cpe08g01101 | 367 | SMART | ring_2 | 311 | 349 | IPR001841 | - | |
| Cpe08g01101 | 367 | Pfam | Zinc finger, C3HC4 type (RING finger) | 309 | 355 | - | - | |
| Cpe08g01101 | 367 | SUPERFAMILY | RING/U-box | 310 | 356 | - | - | |
| Cpe08g01101 | 367 | PANTHER | MAHOGUNIN | 1 | 367 | IPR045194 | GO:0061630 | |
| Cpe08g01101 | 367 | CDD | mRING-HC-C3HC5_MGRN1_like---blasttree | 310 | 350 | IPR045195 | - | |
| Cpe08g01101 | 367 | ProSiteProfiles | Zinc finger RING-type profile. | 311 | 350 | IPR001841 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cpe03g00177 | Cpe08g01101 | CCT | |
| Cpe03g00177 | Cpe08g01101 | ECH |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe03g01415 | Cpe-Chr3:11379203 | Cpe08g01101 | Cpe-Chr8:8334004 | 2.19E-76 | dispersed | |
| Cpe08g00242 | Cpe-Chr8:1585153 | Cpe08g01101 | Cpe-Chr8:8334004 | 5.65E-98 | dispersed | |
| Cpe08g01101 | Cpe-Chr8:8334004 | Cpe04g00106 | Cpe-Chr4:952506 | 2.34E-06 | dispersed | |
| Cpe12g00588 | Cpe-Chr12:5910406 | Cpe08g01101 | Cpe-Chr8:8334004 | 5.09E-06 | dispersed | |
| Cpe03g00177 | Cpe-Chr3:875385 | Cpe08g01101 | Cpe-Chr8:8334004 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe08g01101 | - | - | cmos:111461062 | 675.626 |