Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe08g01104 | ATGTCAAGTAATCCTTTTTCTCTTCTCTCTTCCACTACCACTCCCTTTGTTCCACACCAAGATGCTAACCCTAAATCGAAACCCTCGACCGCTGCGAAGAAGAAACGCAACCTCCCGGGAACCCCAGATCCAGATGCTGAGGTTATTGCTTTGTCGCCGAAATCGCTCATGGCGACGAATAGATTCGTATGCGAAATTTGCAACAAGGGTTTTCAAAGAGATCAGAATCTACAACTTCACCGACGTGGGCATAACCTTCCGTGGAAGCTACGACAACGGACGAACAAGGAGATGATTAAGAAGAAAGTGTATATTTGCCCGGAGAAGACGTGTGTACATCATGATCCGTCGCGAGCCCTCGGTGACCTGACCGGGATAAAGAAACATTTCAGTAGGAAACATGGCGAGAAGAAGTGGAAATGTGATAAGTGTTCTAAGAAATACGCGGTTCAATCCGATTGGAAAGCTCACTCCAAAACCTGTGGGACTCGAGAATATAAGTGCGATTGTGGAACTCTTTTTTCTCGGAAAGACAGCTTCATAACCCACAGAGCATTTTGTGATGCTTTAGCTGAAGAAAGTGCAAGAATCACAACAATTTCAGCAACAAATATTCTCAATAATTTAAGAAATGATTCAATTGTTCTTCATCAACAAGAACAAAACAATCTTGAATCTCTTGGAGATGTTCCTGGGCTTTCCCAATTCAGTAATTCAGATAATTTCTTGAGAGATTTTGAAGAACACCAACACAAGAACAGATCTCCATTGTCCCTTTGGTTAAACCAAGCTTCTGTTGATAATGCAATGAACAACAACAACAACAACATTTCCCACTTTTTTGGAGCTTCTTCTTCCTCCTCCAATCTTTTCGGATCTATGACCGAAAGCGGGCTTTCGGTCTTGCCGGTGATTGAGAAGGAAGACGTTGACAATAAGGGAAGTTTGTCGAAGGCTACGGCGGCCGCCTCGTTGTTAGGTCAATCTTCTCAATCGTTTGTTTCGTCTTCTCCGATGTCGGCCACCGCCCTTCTACAAAAAGCTGCTCTTATGGGCTCGACTAGAAGCAGCAACAATAATAATTCTCCGCTGTTTGGAGCTGGCGCGTTCGGAGTAATGAGCTCGTCGTCTTCGTCATTGAACTCGTTTAATAAATCTAGAAGCTCGACAATGGCCGACTCAATACAGATGGTCGGTAACAACTCCGACATGAGCTCGGATTGTCTCAACCAACTTCTACTACCACCAAATGATAGTAACAAAATGAGAAGTAGCGGTCAAACGAGGGATTTCCTCGGTGTCGGAGGAGGAGAAGCGCCTCGGCCACCGTTCCTCCCGCCGGAGCTTGCAAAATTCGCCGCCATAAACTCGACAATGGGACTAAGCCAATTCAACCACTAA | 1401 | 44.97 | MSSNPFSLLSSTTTPFVPHQDANPKSKPSTAAKKKRNLPGTPDPDAEVIALSPKSLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKEMIKKKVYICPEKTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARITTISATNILNNLRNDSIVLHQQEQNNLESLGDVPGLSQFSNSDNFLRDFEEHQHKNRSPLSLWLNQASVDNAMNNNNNNISHFFGASSSSSNLFGSMTESGLSVLPVIEKEDVDNKGSLSKATAAASLLGQSSQSFVSSSPMSATALLQKAALMGSTRSSNNNNSPLFGAGAFGVMSSSSSSLNSFNKSRSSTMADSIQMVGNNSDMSSDCLNQLLLPPNDSNKMRSSGQTRDFLGVGGGEAPRPPFLPPELAKFAAINSTMGLSQFNH | 466 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 8347530 | 8349567 | - | Cp4.1LG08g11090.1 | Cpe08g01104 | 474070 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe08g01104 | 466 | SUPERFAMILY | beta-beta-alpha zinc fingers | 61 | 159 | IPR036236 | - | |
| Cpe08g01104 | 466 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 64 | 84 | IPR013087 | - | |
| Cpe08g01104 | 466 | Gene3D | Classic Zinc Finger | 97 | 187 | - | - | |
| Cpe08g01104 | 466 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 22 | 440 | - | - | |
| Cpe08g01104 | 466 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
| Cpe08g01104 | 466 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 62 | 84 | IPR013087 | - | |
| Cpe08g01104 | 466 | SMART | c2h2final6 | 104 | 134 | IPR013087 | - | |
| Cpe08g01104 | 466 | SMART | c2h2final6 | 62 | 84 | IPR013087 | - | |
| Cpe08g01104 | 466 | SMART | c2h2final6 | 139 | 159 | IPR013087 | - | |
| Cpe08g01104 | 466 | Gene3D | Classic Zinc Finger | 58 | 85 | - | - | |
| Cpe08g01104 | 466 | MobiDBLite | consensus disorder prediction | 1 | 45 | - | - | |
| Cpe08g01104 | 466 | PANTHER | PROTEIN INDETERMINATE-DOMAIN 13-RELATED | 22 | 440 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cpe08g01104 | Cpe19g00403 | CCT | |
| Cpe03g00175 | Cpe08g01104 | CCT | |
| Cpe08g01104 | Cpe19g00403 | ECH | |
| Cpe03g00175 | Cpe08g01104 | ECH |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe03g01066 | Cpe-Chr3:8815274 | Cpe08g01104 | Cpe-Chr8:8347530 | 5.40E-115 | dispersed | |
| Cpe05g01416 | Cpe-Chr5:9928676 | Cpe08g01104 | Cpe-Chr8:8347530 | 8.51E-109 | dispersed | |
| Cpe08g01104 | Cpe-Chr8:8347530 | Cpe10g00600 | Cpe-Chr10:3504977 | 9.00E-116 | dispersed | |
| Cpe19g00403 | Cpe-Chr19:3582056 | Cpe08g01104 | Cpe-Chr8:8347530 | 1.18E-117 | wgd | |
| Cpe03g00175 | Cpe-Chr3:867681 | Cpe08g01104 | Cpe-Chr8:8347530 | 0 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 49916 | None | None | None | None | Cpe | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe08g01104 | K25870 | - | csv:101213422 | 710.294 |