Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g01104 ATGTCAAGTAATCCTTTTTCTCTTCTCTCTTCCACTACCACTCCCTTTGTTCCACACCAAGATGCTAACCCTAAATCGAAACCCTCGACCGCTGCGAAGAAGAAACGCAACCTCCCGGGAACCCCAGATCCAGATGCTGAGGTTATTGCTTTGTCGCCGAAATCGCTCATGGCGACGAATAGATTCGTATGCGAAATTTGCAACAAGGGTTTTCAAAGAGATCAGAATCTACAACTTCACCGACGTGGGCATAACCTTCCGTGGAAGCTACGACAACGGACGAACAAGGAGATGATTAAGAAGAAAGTGTATATTTGCCCGGAGAAGACGTGTGTACATCATGATCCGTCGCGAGCCCTCGGTGACCTGACCGGGATAAAGAAACATTTCAGTAGGAAACATGGCGAGAAGAAGTGGAAATGTGATAAGTGTTCTAAGAAATACGCGGTTCAATCCGATTGGAAAGCTCACTCCAAAACCTGTGGGACTCGAGAATATAAGTGCGATTGTGGAACTCTTTTTTCTCGGAAAGACAGCTTCATAACCCACAGAGCATTTTGTGATGCTTTAGCTGAAGAAAGTGCAAGAATCACAACAATTTCAGCAACAAATATTCTCAATAATTTAAGAAATGATTCAATTGTTCTTCATCAACAAGAACAAAACAATCTTGAATCTCTTGGAGATGTTCCTGGGCTTTCCCAATTCAGTAATTCAGATAATTTCTTGAGAGATTTTGAAGAACACCAACACAAGAACAGATCTCCATTGTCCCTTTGGTTAAACCAAGCTTCTGTTGATAATGCAATGAACAACAACAACAACAACATTTCCCACTTTTTTGGAGCTTCTTCTTCCTCCTCCAATCTTTTCGGATCTATGACCGAAAGCGGGCTTTCGGTCTTGCCGGTGATTGAGAAGGAAGACGTTGACAATAAGGGAAGTTTGTCGAAGGCTACGGCGGCCGCCTCGTTGTTAGGTCAATCTTCTCAATCGTTTGTTTCGTCTTCTCCGATGTCGGCCACCGCCCTTCTACAAAAAGCTGCTCTTATGGGCTCGACTAGAAGCAGCAACAATAATAATTCTCCGCTGTTTGGAGCTGGCGCGTTCGGAGTAATGAGCTCGTCGTCTTCGTCATTGAACTCGTTTAATAAATCTAGAAGCTCGACAATGGCCGACTCAATACAGATGGTCGGTAACAACTCCGACATGAGCTCGGATTGTCTCAACCAACTTCTACTACCACCAAATGATAGTAACAAAATGAGAAGTAGCGGTCAAACGAGGGATTTCCTCGGTGTCGGAGGAGGAGAAGCGCCTCGGCCACCGTTCCTCCCGCCGGAGCTTGCAAAATTCGCCGCCATAAACTCGACAATGGGACTAAGCCAATTCAACCACTAA 1401 44.97 MSSNPFSLLSSTTTPFVPHQDANPKSKPSTAAKKKRNLPGTPDPDAEVIALSPKSLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKEMIKKKVYICPEKTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARITTISATNILNNLRNDSIVLHQQEQNNLESLGDVPGLSQFSNSDNFLRDFEEHQHKNRSPLSLWLNQASVDNAMNNNNNNISHFFGASSSSSNLFGSMTESGLSVLPVIEKEDVDNKGSLSKATAAASLLGQSSQSFVSSSPMSATALLQKAALMGSTRSSNNNNSPLFGAGAFGVMSSSSSSLNSFNKSRSSTMADSIQMVGNNSDMSSDCLNQLLLPPNDSNKMRSSGQTRDFLGVGGGEAPRPPFLPPELAKFAAINSTMGLSQFNH 466
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 8347530 8349567 - Cp4.1LG08g11090.1 Cpe08g01104 474070
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g01104 466 SUPERFAMILY beta-beta-alpha zinc fingers 61 159 IPR036236 -
Cpe08g01104 466 ProSitePatterns Zinc finger C2H2 type domain signature. 64 84 IPR013087 -
Cpe08g01104 466 Gene3D Classic Zinc Finger 97 187 - -
Cpe08g01104 466 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 22 440 - -
Cpe08g01104 466 MobiDBLite consensus disorder prediction 1 27 - -
Cpe08g01104 466 ProSiteProfiles Zinc finger C2H2 type domain profile. 62 84 IPR013087 -
Cpe08g01104 466 SMART c2h2final6 104 134 IPR013087 -
Cpe08g01104 466 SMART c2h2final6 62 84 IPR013087 -
Cpe08g01104 466 SMART c2h2final6 139 159 IPR013087 -
Cpe08g01104 466 Gene3D Classic Zinc Finger 58 85 - -
Cpe08g01104 466 MobiDBLite consensus disorder prediction 1 45 - -
Cpe08g01104 466 PANTHER PROTEIN INDETERMINATE-DOMAIN 13-RELATED 22 440 - -
       

Event-related genes


       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01066 Cpe-Chr3:8815274 Cpe08g01104 Cpe-Chr8:8347530 5.40E-115 dispersed
Cpe05g01416 Cpe-Chr5:9928676 Cpe08g01104 Cpe-Chr8:8347530 8.51E-109 dispersed
Cpe08g01104 Cpe-Chr8:8347530 Cpe10g00600 Cpe-Chr10:3504977 9.00E-116 dispersed
Cpe19g00403 Cpe-Chr19:3582056 Cpe08g01104 Cpe-Chr8:8347530 1.18E-117 wgd
Cpe03g00175 Cpe-Chr3:867681 Cpe08g01104 Cpe-Chr8:8347530 0 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49916 None None None None Cpe TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g01104 K25870 - csv:101213422 710.294