Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g01122 ATGTCCGGCGATCATTACAGAGCGAAGATAGGCATGGAGCAAGCGTTTTCAGACTTCGACATAGCTGGAGACATCTTTGATTTGTACTTCCCCCATACTGTCTTCACTGTCGAAAATGAATGGCTTAAGCTCATTTCTCAGCTTATTTTCTTCTTTTCTTCTCCGGCAGGTCGGCATCTTGCTTCACAGGCTATTGATGATGGTCGTGGCATCTTTATTTTATCAATTGACTTTCAACACTTCCGAAAGATTTGCGATGAACATGAACTTTACCTAATGTTAGAGAAAGATCCTAAAGTTGCTCTCAAATGTATGAGTGCGGCACTTCACCAGGTAATGAGGACCAAATGGGCGCACAATTTAGAAGTTGTCGCAAAAATTCTAGTCCGGTTGCACAACTATTCAGAATCCATGCTTGCTTTGAAGAACTTGAAGGCAGCATATATTGACAAGCTTGTATCAGTGCGTGGTACTGTTGTTAAAGTTAGCACTGTTAAGCCTTTGGTGGTGCAAATGAGCTTTGATTGTGCTAAATGTAAAAGCAATATTACACGCATCTTTCCTGATGGTAAGTTTTCACCTCCATCGTTTTGTGAGCTGGATGGGTGCAAAAGCAAAACATTTATTCCCATTCGATCTACAGCTGAAGCAATTGACTTCCAGAAAATACGGTTGCAAGAACTCACTAAATCTGATGACCATGAAGAAGGAAGGGTGCCTCGAACTGTAGAATGTGAACTGACTGAAGATCTTGTTGACGCATGCATCCCTGGAGATGTTGTCACTGTTACTGGAATCATAAAAGTAATTAACAATTACATGGATATTGGAGGAGCTGGAATAACACTAGCTCTATTTGGTGGTGTTCGAAAGCATTCAAAAGACCAGAATAAAGTTCCTGTTAGAGGGGATATTCATGTCATAGTTGTTGGTGATCCTGGACTTGGCAAAAGTCAAATACTGCAAGCAGCTGCAGCTATTTCTCCACGTGGAATTTATGTTTGTGGTAATGCAACAACCAAGGCGGGCCTAACTGTAGCTGTTGTGAGGGATTCCATGACAAATGACTATGCTTTTGAGGCTGGGGCTATGGTACTTGCAGATGGTGGATTATGCTGTATAGATGAGTTTGATAAAATGTCTGCAGAACATCAGGCCCTATTGGAAGCCATGGAACAACAATGTGTATCGATTGCAAAAGCTGGGCTGGTAGCAAGTCTATCAGCACGTACTTCCGTTTTAGCTGCAGCTAACCCTGTTGGCGGACATTACAACCGGGCAAAAACTGTAAATGAAAACTTGAAGATGAGAGCTGCTCTGCTCTCGAGATTTGATTTAGTTTTCATATTGCTGGATAAACCTGACGAATTTCTGGATAAGAGAGTCTCAGAGCACATCATGTCGCTTCATGCAGGATATGGGGAACGCGCTTCTACAGCAAAAAGATTACGCAAAGATATATCTCCTTTGGCCTTAAAGAATGTACCAATGGAGAATGATGGAAAAGGAGATGCTTGTTCAAAAGGCGAGTCTTTAGTTTCAAGACTGAGATTGGACCAAGCAAAAGATAGCGATTTTGTACCATTACCTGGCCAACTTCTTCGCAAATATATATCCTATGCAAGAACTTTTGTTTTCCCCAGGATGTCAAAGCCGGCAGCAGACATTTTGCAAAAGTTTTACTTGCGACTGCGTGACCAGAATACATCAGCTGATGGTACACCAATTACAGCAAGGCAACTAGAAAGTCTGGTGAGGCTGGCGGAAGCTCGAGCACGGGTAGACCTCAGGGAAGAAATTACAGTACAAGATGCCATGGATGTGGTAGAAATAATGAAGGAATCCCTTTATGACAAGTACGTAGATGAACATGGGGTCCTGGATTTTGGTCGAAGTGGAGGAATGAGTCAACAGAAAGAAGCCAAGCGATTTTTAAGTGCACTCAACAAGCAATCAGATTTGCAGCAGAAAGATTGTTTCTCCATCTCCGAAATATATATCTTGGCAGATAGGATTGGTCTGCAAGTACCCGACATCGATACCTTCATAGAAAATCTTAACAGTGTTGGATATCTGCTTAAGAAGGGACCAAAGACATATCAGGTGCTATCCTCATCTTACACCAGTCAATCTACAAGGTCTAGGGGATAA 2151 42.12 MSGDHYRAKIGMEQAFSDFDIAGDIFDLYFPHTVFTVENEWLKLISQLIFFFSSPAGRHLASQAIDDGRGIFILSIDFQHFRKICDEHELYLMLEKDPKVALKCMSAALHQVMRTKWAHNLEVVAKILVRLHNYSESMLALKNLKAAYIDKLVSVRGTVVKVSTVKPLVVQMSFDCAKCKSNITRIFPDGKFSPPSFCELDGCKSKTFIPIRSTAEAIDFQKIRLQELTKSDDHEEGRVPRTVECELTEDLVDACIPGDVVTVTGIIKVINNYMDIGGAGITLALFGGVRKHSKDQNKVPVRGDIHVIVVGDPGLGKSQILQAAAAISPRGIYVCGNATTKAGLTVAVVRDSMTNDYAFEAGAMVLADGGLCCIDEFDKMSAEHQALLEAMEQQCVSIAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMRAALLSRFDLVFILLDKPDEFLDKRVSEHIMSLHAGYGERASTAKRLRKDISPLALKNVPMENDGKGDACSKGESLVSRLRLDQAKDSDFVPLPGQLLRKYISYARTFVFPRMSKPAADILQKFYLRLRDQNTSADGTPITARQLESLVRLAEARARVDLREEITVQDAMDVVEIMKESLYDKYVDEHGVLDFGRSGGMSQQKEAKRFLSALNKQSDLQQKDCFSISEIYILADRIGLQVPDIDTFIENLNSVGYLLKKGPKTYQVLSSSYTSQSTRSRG 716
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 8422987 8429242 + Cp4.1LG08g11220.1 Cpe08g01122 474088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g01122 716 Gene3D - 168 218 - -
Cpe08g01122 716 SUPERFAMILY Nucleic acid-binding proteins 69 271 IPR012340 -
Cpe08g01122 716 Gene3D - 141 269 IPR012340 -
Cpe08g01122 716 PRINTS Mini-chromosome maintenance (MCM) protein family signature 413 425 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cpe08g01122 716 PRINTS Mini-chromosome maintenance (MCM) protein family signature 302 317 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cpe08g01122 716 PRINTS Mini-chromosome maintenance (MCM) protein family signature 362 376 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cpe08g01122 716 PRINTS Mini-chromosome maintenance (MCM) protein family signature 389 402 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cpe08g01122 716 PRINTS Mini-chromosome maintenance (MCM) protein family signature 440 448 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cpe08g01122 716 CDD MCM8 279 615 - -
Cpe08g01122 716 PANTHER DNA HELICASE MCM8 15 276 - -
Cpe08g01122 716 ProSiteProfiles MCM family domain profile. 280 466 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cpe08g01122 716 Coils Coil 374 394 - -
Cpe08g01122 716 SMART AAA_5 303 455 IPR003593 -
Cpe08g01122 716 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 281 622 IPR027417 -
Cpe08g01122 716 Pfam MCM OB domain 141 270 IPR033762 -
Cpe08g01122 716 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 279 711 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cpe08g01122 716 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 15 276 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cpe08g01122 716 SMART mcm 137 617 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cpe08g01122 716 Pfam MCM AAA-lid domain 533 616 IPR041562 -
Cpe08g01122 716 PANTHER DNA HELICASE MCM8 279 711 - -
Cpe08g01122 716 Gene3D - 270 625 IPR027417 -
Cpe08g01122 716 Pfam MCM P-loop domain 268 470 IPR001208 GO:0003677|GO:0005524|GO:0032508
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g01122 Cpe-Chr8:8422987 Cpe04g00111 Cpe-Chr4:991728 1.24E-11 dispersed
Cpe03g00158 Cpe-Chr3:802777 Cpe08g01122 Cpe-Chr8:8422987 2.65E-06 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g01122 K10737 - csv:101211972 782.711