Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g01124 ATGGTCATATTCATGGGTTTTGTTGATGATGTTGTCTCGTTATTGGTTTTTTGTGATAGGGTAGTGAAGAACATGGCTGATGCTCCGGCGAGCCCTGGCGGAGGTAGCCATGAGAGCGGTGAGCATAGTCCGAGGTCTAATGTTCGTGAACAGGATAGGTTTCTTCCGATTGCGAATATTAGTAGGATCATGAAGAAGGCTCTTCCTGCTAATGGTAAGATTGCGAAGGATGCCAAGGAGACCGTACAAGAATGTGTTTCGGAGTTCATCAGTTTTATCACTAGCGAGGCTAGTGATAAATGTCAAAGAGAGAAACGAAAGACGATTAATGGAGATGATTTGCTTTGGGCTATGGCGACTCTTGGATTTGAGGATTATATCGATCCGCTAAAAACCTACTTGACGAAATACAGAGAGGTACTCAAAATCGGCTAA 435 43.68 MVIFMGFVDDVVSLLVFCDRVVKNMADAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYREVLKIG 144
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 8440769 8444534 - Cp4.1LG08g11300.1 Cpe08g01124 474090
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g01124 144 Gene3D Histone, subunit A 40 143 IPR009072 GO:0046982
Cpe08g01124 144 MobiDBLite consensus disorder prediction 28 50 - -
Cpe08g01124 144 PRINTS CCAAT-binding transcription factor subunit A signature 120 138 - -
Cpe08g01124 144 PRINTS CCAAT-binding transcription factor subunit A signature 101 119 - -
Cpe08g01124 144 PRINTS CCAAT-binding transcription factor subunit A signature 82 100 - -
Cpe08g01124 144 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 25 141 IPR027113 GO:0001228|GO:0006355|GO:0016602
Cpe08g01124 144 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 54 118 IPR003958 -
Cpe08g01124 144 ProSitePatterns NF-YB/HAP3 subunit signature. 85 101 IPR003956 GO:0005634|GO:0006355|GO:0043565
Cpe08g01124 144 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-8 25 141 - -
Cpe08g01124 144 SUPERFAMILY Histone-fold 51 142 IPR009072 GO:0046982
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g01124 Cpe-Chr8:8440769 Cpe16g00379 Cpe-Chr16:5421766 1.58E-60 dispersed
Cpe01g01136 Cpe-Chr1:6740878 Cpe08g01124 Cpe-Chr8:8440769 2.11E-08 wgd
Cpe01g00231 Cpe-Chr1:1311500 Cpe08g01124 Cpe-Chr8:8440769 6.24E-71 wgd
Cpe03g00156 Cpe-Chr3:787733 Cpe08g01124 Cpe-Chr8:8440769 3.15E-83 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49918 PF00808 CBFD_NFYB_HMF 5.10E-28 CL0012 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g01124 K08065 - csv:101212699 223.402