Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe08g01126 | ATGCTGAATCTTAACCACGACGTTGTTCCATCGGAGATGGTTACTGAGAATTTTCTGAATCTTCCAGCGAACAGAATGGAAACCGCTGGATGTTTCAACTCGTCCTCCGTCGTTAATGGCGATCCTTCCGCCAGCACCACCAACGTCGACGAGGTTTTCCCGTTCACTTTCGGTAAAAATTCCGCGGTTCAAGAAAGCTCAACGGTGAAATCACTTTCTATTTCCGATGACCACTGCGACCAGACGATGGAGCTCTTCCCGTTAACGGACGGATTAAATTCTATTTCCGATGAATTTAACTCCGATGACCACCGCGACCAGACGATGGAGTTCTTCCCGTTAACCGACGGATTAAATTCTAGTTCGAGTACTCAGAAGCAGTGGCCGGAGGTTTCTCCATCGGAATTCAATCATGGAGACGGCGGCGCACCGGCGCAGCCACAGGATCAGACGATGAGGAAAAACAGACGCGGTCCAAGGCCTCGAAGTTCGCAGTATCGTGGCGTTACGTATTATCGTAGAACCGGGAGATGGGAATCGCATATTTGGGACTGCGGGAAACAGGTTTATTTGGGCGGTTTCGATACTGCTCATGCTGCCGCCAGAGCATATGATAAAGCGGCGATCAAGTTTCGGGGGGTCGACGCAGATATCAATTTCAGTGTCAAAAATTATGAAGAAGATATCAAACAGATGAGTAATATCAGTAAGGAAGAGCTTATTCATAATCTTCGTCGCCGTAGCAATGGATTTACAAGAGGGAGCTCGAAGTACAGAGGAGTTACCTTGCATAAATGTGGTCGATGGGAAGCTCGGATGGGCCAGTTCTTGGGCAGGAAGTACATGTATCTTGGTCTCTTTGATAGTGAGATTGAAGCTGCAAGATGCAATGGTAAAGAGGCTGTAACAAACTTTGATCCAAGTTCTTATATGTCAGAGATGGCTGCAGAGACTGACACAGGAGAGGACAACCAGAGTCTTGACCTGAGCTTGCGAATTGCTCCCCCCAATCATTCTGACCCTCAAAGTGAGAGCATTGGCATGTTTGGTAATGGTTGTCATCTCAGCTCACCTGACATCGTCGTTGATGGTAGAGCGACGCTTGAGAACTCTGTTACAGCAGCAATTGGATCTTCTCAGCCATATGGCTATGCTGTGCCTTCAAATTCCTGTTTCTTTCCCATCTCCAGGGAAAGAGCAGCAGAGACGAGAATGGGGGAGTGGCAAATCCATGGCCACTCAAATGGATTAACCTCTGTGCCATTCTTCTCTGCTGCAGCATCATCAGGATTCCTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAACTTCTTCTTCTTCTGCCATTTCATCCTCTGCTGTTGGTGAAATCCATTTCTCAGCTATTTTCCATCACCATGACAGCAACTTATCCAACTTCTACTGTAGGAATTGA | 1464 | 46.72 | MLNLNHDVVPSEMVTENFLNLPANRMETAGCFNSSSVVNGDPSASTTNVDEVFPFTFGKNSAVQESSTVKSLSISDDHCDQTMELFPLTDGLNSISDEFNSDDHRDQTMEFFPLTDGLNSSSSTQKQWPEVSPSEFNHGDGGAPAQPQDQTMRKNRRGPRPRSSQYRGVTYYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDKAAIKFRGVDADINFSVKNYEEDIKQMSNISKEELIHNLRRRSNGFTRGSSKYRGVTLHKCGRWEARMGQFLGRKYMYLGLFDSEIEAARCNGKEAVTNFDPSSYMSEMAAETDTGEDNQSLDLSLRIAPPNHSDPQSESIGMFGNGCHLSSPDIVVDGRATLENSVTAAIGSSQPYGYAVPSNSCFFPISRERAAETRMGEWQIHGHSNGLTSVPFFSAAASSGFLSSSSSSSSSSSSSSSSSSSSTSSSSAISSSAVGEIHFSAIFHHHDSNLSNFYCRN | 487 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 8455417 | 8457904 | - | Cp4.1LG08g11310.1 | Cpe08g01126 | 474092 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe08g01126 | 487 | Gene3D | AP2/ERF domain | 256 | 307 | IPR036955 | GO:0003700|GO:0006355 | |
Cpe08g01126 | 487 | Gene3D | AP2/ERF domain | 164 | 223 | IPR036955 | GO:0003700|GO:0006355 | |
Cpe08g01126 | 487 | SUPERFAMILY | DNA-binding domain | 164 | 222 | IPR016177 | GO:0003677 | |
Cpe08g01126 | 487 | MobiDBLite | consensus disorder prediction | 436 | 458 | - | - | |
Cpe08g01126 | 487 | ProSiteProfiles | AP2/ERF domain profile. | 257 | 295 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe08g01126 | 487 | Pfam | AP2 domain | 165 | 213 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe08g01126 | 487 | SUPERFAMILY | DNA-binding domain | 256 | 306 | IPR016177 | GO:0003677 | |
Cpe08g01126 | 487 | MobiDBLite | consensus disorder prediction | 115 | 166 | - | - | |
Cpe08g01126 | 487 | SMART | rav1_2 | 257 | 312 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe08g01126 | 487 | SMART | rav1_2 | 165 | 227 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe08g01126 | 487 | PANTHER | AP2 DOMAIN TRANSCRIPTION FACTOR | 1 | 455 | - | - | |
Cpe08g01126 | 487 | CDD | AP2 | 256 | 308 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe08g01126 | 487 | CDD | AP2 | 164 | 220 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe08g01126 | 487 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 1 | 455 | - | - | |
Cpe08g01126 | 487 | MobiDBLite | consensus disorder prediction | 115 | 132 | - | - | |
Cpe08g01126 | 487 | ProSiteProfiles | AP2/ERF domain profile. | 165 | 221 | IPR001471 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe08g01126 | Cpe-Chr8:8455417 | Cpe10g00444 | Cpe-Chr10:2595462 | 6.45E-84 | dispersed | |
Cpe01g01135 | Cpe-Chr1:6736665 | Cpe08g01126 | Cpe-Chr8:8455417 | 1.36E-66 | wgd | |
Cpe01g00229 | Cpe-Chr1:1301560 | Cpe08g01126 | Cpe-Chr8:8455417 | 8.66E-59 | wgd | |
Cpe16g00565 | Cpe-Chr16:6443669 | Cpe08g01126 | Cpe-Chr8:8455417 | 1.07E-97 | wgd | |
Cpe19g00398 | Cpe-Chr19:3551661 | Cpe08g01126 | Cpe-Chr8:8455417 | 2.49E-79 | wgd | |
Cpe03g00153 | Cpe-Chr3:770883 | Cpe08g01126 | Cpe-Chr8:8455417 | 6.14E-164 | wgd | |
Cpe05g00875 | Cpe-Chr5:5758181 | Cpe08g01126 | Cpe-Chr8:8455417 | 9.13E-104 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
49919 | PF00847 | AP2 | 3.80E-10 | CL0081 | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe08g01126 | K09284 | - | csv:101211242 | 552.362 |