Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g01126 ATGCTGAATCTTAACCACGACGTTGTTCCATCGGAGATGGTTACTGAGAATTTTCTGAATCTTCCAGCGAACAGAATGGAAACCGCTGGATGTTTCAACTCGTCCTCCGTCGTTAATGGCGATCCTTCCGCCAGCACCACCAACGTCGACGAGGTTTTCCCGTTCACTTTCGGTAAAAATTCCGCGGTTCAAGAAAGCTCAACGGTGAAATCACTTTCTATTTCCGATGACCACTGCGACCAGACGATGGAGCTCTTCCCGTTAACGGACGGATTAAATTCTATTTCCGATGAATTTAACTCCGATGACCACCGCGACCAGACGATGGAGTTCTTCCCGTTAACCGACGGATTAAATTCTAGTTCGAGTACTCAGAAGCAGTGGCCGGAGGTTTCTCCATCGGAATTCAATCATGGAGACGGCGGCGCACCGGCGCAGCCACAGGATCAGACGATGAGGAAAAACAGACGCGGTCCAAGGCCTCGAAGTTCGCAGTATCGTGGCGTTACGTATTATCGTAGAACCGGGAGATGGGAATCGCATATTTGGGACTGCGGGAAACAGGTTTATTTGGGCGGTTTCGATACTGCTCATGCTGCCGCCAGAGCATATGATAAAGCGGCGATCAAGTTTCGGGGGGTCGACGCAGATATCAATTTCAGTGTCAAAAATTATGAAGAAGATATCAAACAGATGAGTAATATCAGTAAGGAAGAGCTTATTCATAATCTTCGTCGCCGTAGCAATGGATTTACAAGAGGGAGCTCGAAGTACAGAGGAGTTACCTTGCATAAATGTGGTCGATGGGAAGCTCGGATGGGCCAGTTCTTGGGCAGGAAGTACATGTATCTTGGTCTCTTTGATAGTGAGATTGAAGCTGCAAGATGCAATGGTAAAGAGGCTGTAACAAACTTTGATCCAAGTTCTTATATGTCAGAGATGGCTGCAGAGACTGACACAGGAGAGGACAACCAGAGTCTTGACCTGAGCTTGCGAATTGCTCCCCCCAATCATTCTGACCCTCAAAGTGAGAGCATTGGCATGTTTGGTAATGGTTGTCATCTCAGCTCACCTGACATCGTCGTTGATGGTAGAGCGACGCTTGAGAACTCTGTTACAGCAGCAATTGGATCTTCTCAGCCATATGGCTATGCTGTGCCTTCAAATTCCTGTTTCTTTCCCATCTCCAGGGAAAGAGCAGCAGAGACGAGAATGGGGGAGTGGCAAATCCATGGCCACTCAAATGGATTAACCTCTGTGCCATTCTTCTCTGCTGCAGCATCATCAGGATTCCTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAACTTCTTCTTCTTCTGCCATTTCATCCTCTGCTGTTGGTGAAATCCATTTCTCAGCTATTTTCCATCACCATGACAGCAACTTATCCAACTTCTACTGTAGGAATTGA 1464 46.72 MLNLNHDVVPSEMVTENFLNLPANRMETAGCFNSSSVVNGDPSASTTNVDEVFPFTFGKNSAVQESSTVKSLSISDDHCDQTMELFPLTDGLNSISDEFNSDDHRDQTMEFFPLTDGLNSSSSTQKQWPEVSPSEFNHGDGGAPAQPQDQTMRKNRRGPRPRSSQYRGVTYYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDKAAIKFRGVDADINFSVKNYEEDIKQMSNISKEELIHNLRRRSNGFTRGSSKYRGVTLHKCGRWEARMGQFLGRKYMYLGLFDSEIEAARCNGKEAVTNFDPSSYMSEMAAETDTGEDNQSLDLSLRIAPPNHSDPQSESIGMFGNGCHLSSPDIVVDGRATLENSVTAAIGSSQPYGYAVPSNSCFFPISRERAAETRMGEWQIHGHSNGLTSVPFFSAAASSGFLSSSSSSSSSSSSSSSSSSSSTSSSSAISSSAVGEIHFSAIFHHHDSNLSNFYCRN 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 8455417 8457904 - Cp4.1LG08g11310.1 Cpe08g01126 474092
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g01126 487 Gene3D AP2/ERF domain 256 307 IPR036955 GO:0003700|GO:0006355
Cpe08g01126 487 Gene3D AP2/ERF domain 164 223 IPR036955 GO:0003700|GO:0006355
Cpe08g01126 487 SUPERFAMILY DNA-binding domain 164 222 IPR016177 GO:0003677
Cpe08g01126 487 MobiDBLite consensus disorder prediction 436 458 - -
Cpe08g01126 487 ProSiteProfiles AP2/ERF domain profile. 257 295 IPR001471 GO:0003700|GO:0006355
Cpe08g01126 487 Pfam AP2 domain 165 213 IPR001471 GO:0003700|GO:0006355
Cpe08g01126 487 SUPERFAMILY DNA-binding domain 256 306 IPR016177 GO:0003677
Cpe08g01126 487 MobiDBLite consensus disorder prediction 115 166 - -
Cpe08g01126 487 SMART rav1_2 257 312 IPR001471 GO:0003700|GO:0006355
Cpe08g01126 487 SMART rav1_2 165 227 IPR001471 GO:0003700|GO:0006355
Cpe08g01126 487 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 1 455 - -
Cpe08g01126 487 CDD AP2 256 308 IPR001471 GO:0003700|GO:0006355
Cpe08g01126 487 CDD AP2 164 220 IPR001471 GO:0003700|GO:0006355
Cpe08g01126 487 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 455 - -
Cpe08g01126 487 MobiDBLite consensus disorder prediction 115 132 - -
Cpe08g01126 487 ProSiteProfiles AP2/ERF domain profile. 165 221 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g01126 Cpe-Chr8:8455417 Cpe10g00444 Cpe-Chr10:2595462 6.45E-84 dispersed
Cpe01g01135 Cpe-Chr1:6736665 Cpe08g01126 Cpe-Chr8:8455417 1.36E-66 wgd
Cpe01g00229 Cpe-Chr1:1301560 Cpe08g01126 Cpe-Chr8:8455417 8.66E-59 wgd
Cpe16g00565 Cpe-Chr16:6443669 Cpe08g01126 Cpe-Chr8:8455417 1.07E-97 wgd
Cpe19g00398 Cpe-Chr19:3551661 Cpe08g01126 Cpe-Chr8:8455417 2.49E-79 wgd
Cpe03g00153 Cpe-Chr3:770883 Cpe08g01126 Cpe-Chr8:8455417 6.14E-164 wgd
Cpe05g00875 Cpe-Chr5:5758181 Cpe08g01126 Cpe-Chr8:8455417 9.13E-104 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49919 PF00847 AP2 3.80E-10 CL0081 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g01126 K09284 - csv:101211242 552.362