Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g01137 ATGGCCGCCCTCTCCACCCTCTCTCCGCCGCATCTCTCCGATCTCTCCCACTCCATTTTCTCCGACGTCCACACCAGCCGCCGTCGCCTAACCTTCATCCTCTCTTCTCCAACCCTCTTCTCCTTCACTCTCCGCCACCTCAATTCCCTTTCCCTTTCCAACAAATCTCTCCTCATCGCCCGCTTCCTTCTCTCAGCTCTCCGCCGTCTCTCCCGTCCCTTCCAGACGCCGTCGAAGTCCTTCCCCCACCACCCTTCTACCGCCGCCGTTACCCCTCGCGACCTCGACGCCGCCGTCCTCCTCCTCCTTCTCTGCGATGTACGCCAGCATAATCCGGCCGCCCTCGAAACTCCGATCACCCGATGGCGATCGACCCTCTGTCGAATCTACTCCGATTCCCTCTTGACGATCTCTGGCATCGCCACCGGCGGCGCCGGGGCCTTTATTCCGTATATTGAGACGGTGGCCAGATGCTGGAAATTCGTGGGATTTGTTGTGAGCCGCAACGGCGGAAAGGCCCGGAGAGAGGTGGCGGCGTCGCCTGTCGCAGTGGTGGAGTTGCCGTCGGTGGCGGTGGGCGGCTGTATGGCGGTGGAATGTGTGATTTGTAAAGAGGAGATGAATGAAGGGAGAGACGCGTGTCAATTGCCTTGTGAGCACTTATTCCATTGGCTCTGTATTCTGCCATGGCTGAGGAAGAGGAACACGTGTCCCTGTTGCAGGTTTCAGCTTCCCACAGATGATATCTTCGGCGAGATCCAACGGCTCTGGGACATCCTCGTCAAGGTGGGTTCCCCATCTGATGGAGATTAA 813 58.67 MAALSTLSPPHLSDLSHSIFSDVHTSRRRLTFILSSPTLFSFTLRHLNSLSLSNKSLLIARFLLSALRRLSRPFQTPSKSFPHHPSTAAVTPRDLDAAVLLLLLCDVRQHNPAALETPITRWRSTLCRIYSDSLLTISGIATGGAGAFIPYIETVARCWKFVGFVVSRNGGKARREVAASPVAVVELPSVAVGGCMAVECVICKEEMNEGRDACQLPCEHLFHWLCILPWLRKRNTCPCCRFQLPTDDIFGEIQRLWDILVKVGSPSDGD 270
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 8501583 8502395 - Cp4.1LG08g11270.1 Cpe08g01137 474103
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g01137 270 SMART ring_2 200 240 IPR001841 -
Cpe08g01137 270 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 1 265 - -
Cpe08g01137 270 Pfam Ring finger domain 199 241 IPR001841 -
Cpe08g01137 270 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 170 247 IPR013083 -
Cpe08g01137 270 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SGR9, AMYLOPLASTIC 1 265 - -
Cpe08g01137 270 ProSiteProfiles Zinc finger RING-type profile. 200 241 IPR001841 -
Cpe08g01137 270 SUPERFAMILY RING/U-box 199 247 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g01137 Cpe-Chr8:8501583 Cpe10g01020 Cpe-Chr10:5888192 1.18E-14 dispersed
Cpe08g01137 Cpe-Chr8:8501583 Cpe13g00998 Cpe-Chr13:8246715 1.80E-15 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g01137 - - csv:101209757 405.601