Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe08g01137 | ATGGCCGCCCTCTCCACCCTCTCTCCGCCGCATCTCTCCGATCTCTCCCACTCCATTTTCTCCGACGTCCACACCAGCCGCCGTCGCCTAACCTTCATCCTCTCTTCTCCAACCCTCTTCTCCTTCACTCTCCGCCACCTCAATTCCCTTTCCCTTTCCAACAAATCTCTCCTCATCGCCCGCTTCCTTCTCTCAGCTCTCCGCCGTCTCTCCCGTCCCTTCCAGACGCCGTCGAAGTCCTTCCCCCACCACCCTTCTACCGCCGCCGTTACCCCTCGCGACCTCGACGCCGCCGTCCTCCTCCTCCTTCTCTGCGATGTACGCCAGCATAATCCGGCCGCCCTCGAAACTCCGATCACCCGATGGCGATCGACCCTCTGTCGAATCTACTCCGATTCCCTCTTGACGATCTCTGGCATCGCCACCGGCGGCGCCGGGGCCTTTATTCCGTATATTGAGACGGTGGCCAGATGCTGGAAATTCGTGGGATTTGTTGTGAGCCGCAACGGCGGAAAGGCCCGGAGAGAGGTGGCGGCGTCGCCTGTCGCAGTGGTGGAGTTGCCGTCGGTGGCGGTGGGCGGCTGTATGGCGGTGGAATGTGTGATTTGTAAAGAGGAGATGAATGAAGGGAGAGACGCGTGTCAATTGCCTTGTGAGCACTTATTCCATTGGCTCTGTATTCTGCCATGGCTGAGGAAGAGGAACACGTGTCCCTGTTGCAGGTTTCAGCTTCCCACAGATGATATCTTCGGCGAGATCCAACGGCTCTGGGACATCCTCGTCAAGGTGGGTTCCCCATCTGATGGAGATTAA | 813 | 58.67 | MAALSTLSPPHLSDLSHSIFSDVHTSRRRLTFILSSPTLFSFTLRHLNSLSLSNKSLLIARFLLSALRRLSRPFQTPSKSFPHHPSTAAVTPRDLDAAVLLLLLCDVRQHNPAALETPITRWRSTLCRIYSDSLLTISGIATGGAGAFIPYIETVARCWKFVGFVVSRNGGKARREVAASPVAVVELPSVAVGGCMAVECVICKEEMNEGRDACQLPCEHLFHWLCILPWLRKRNTCPCCRFQLPTDDIFGEIQRLWDILVKVGSPSDGD | 270 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 8501583 | 8502395 | - | Cp4.1LG08g11270.1 | Cpe08g01137 | 474103 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe08g01137 | 270 | SMART | ring_2 | 200 | 240 | IPR001841 | - | |
| Cpe08g01137 | 270 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 1 | 265 | - | - | |
| Cpe08g01137 | 270 | Pfam | Ring finger domain | 199 | 241 | IPR001841 | - | |
| Cpe08g01137 | 270 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 170 | 247 | IPR013083 | - | |
| Cpe08g01137 | 270 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE SGR9, AMYLOPLASTIC | 1 | 265 | - | - | |
| Cpe08g01137 | 270 | ProSiteProfiles | Zinc finger RING-type profile. | 200 | 241 | IPR001841 | - | |
| Cpe08g01137 | 270 | SUPERFAMILY | RING/U-box | 199 | 247 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe08g01137 | Cpe-Chr8:8501583 | Cpe10g01020 | Cpe-Chr10:5888192 | 1.18E-14 | dispersed | |
| Cpe08g01137 | Cpe-Chr8:8501583 | Cpe13g00998 | Cpe-Chr13:8246715 | 1.80E-15 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe08g01137 | - | - | csv:101209757 | 405.601 |