Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g01153 ATGGGAGAAGAAGCACCTGGTTTGGTTGCAGTTGCAAATAAGCCGCTGGAGAAAGAGAGCGCTTCGAGTACCGAATTGAAGCGTGACCATCAGTATCTCGATGAAGATACGGAACCTGAGTCGTTTCACAATAAGAAGCAGGCAAAAGAAGTGTCGAATGAAGACGTTCGGTCAGAAGTTTCTAATCCTGTAATTTCTCCGAAAGGGAATCATTTCCAAGATATTACCAGTCAGCCAGACGAGCAAGAAAATACCAACCAAGTTGAGCGTGGGGACCTTACGTCGGCTTGTTCGGGAAATTCAAGCTCAGAGGATACCTCAAGCGATGGAGTTCGTTGCCAGAACAACACGTCTCGGAATGAAGTTGATGTGTGTGATGATGATGAAGTCTCCCGGGTTGTGATTGAAATTCCTAAGCATGCTAGTTCAACTGGAATTAAGAAAATTACGTTCAAATTCAGCAAAAAAAAGGACAACAATGACGCATCCAGGTCAGCTGACAAAGTTCATTCTTATGGAAACTCTGACAAGGACTGTAAACCCGAACCATCCTCGGTTGACGATGCTTATACGGAGACATCTGCACATAGCTGGGAAGGCTGTGCTGAGAGCAGCAGGTTTCCTCCAGGCCCCAGTAAAATGGAACTGAAAATGTCGAAGAAGGTTTTGCCAAACAATTACCCGTCAAATGTGAAAAAGCTGCTGTCTACTGGTATACTTGACGGAGCTCGCGTCAAGTATATATCTACGACAAGCGAGATAAAGCTAGATGGTATCATAAACGGCGGAGGTTATATGTGCGGATGTTCAATATGCAATTTTACAACTATTCTCAGTGCTTATGAGTTTGAGCAGCATGCTGGTTTCAAAACTAGACATCCAAATAATCATATATACTTGGAGAATGGGAGGCCGATTTATAGTGTTATACAGGAAATTAAGAGTGCACCTCTTAGCATTTTAGATGAAGTGATTAAGGAAGTAGCGGGTTCATCTGTTAACATGGATTCATTTGAGGCTTGGCAAGCAAGTTTCCACAAGGACAGTTCAGGCATTGAAGTGGAAAATGATAATGTGAAGCTTCCTAAATTGTCACATCCCATTGAGAGACTGAACCCTAATTTATCCAACCCAGTCATGCAACAGAAGAAATCGGCGGAGAAAGGCACAAAAAGAAGGGACAATGATCTTCACAGGCTACTTTTCATGCCAAATGGGCTTCCAGATGGGGCTGAGCTAGCTTACTTTGTCAAAGGACAGAGAATACTTGGAGGCTACAAGCAAGGAAATGGTATACTCTGTAGTCACTGTAATCGCGAGATTAGCCCTTCACAGTTCGAAGCCCATGCAGGGATGGCTGCCAGACGTCAACCCTACCGTCACATTTATACTACAAATGGTCTTACACTTCATGATATTGCCATTTCCCTGGCTAGTGGGCAAAAACTTTCATCAGGAGACAGTGATGATATGTGTGCTGCATGTGGTAATGGAGGGGATTTGATTTTCTGTGATCGATGTCCTCGAGCTTTCCACACAGNGGGGGGGAATATCATCTTGTTCTTTCCAGGGTGCCTGCATCTACAGAATGTCCCAGAAGGTGTTTGGTGTTGCCCAAACTGTAGAGACAAAGTGGGTTCCAGTTTGAAGGCAGCTTCCGGAGGCCCTTCGAGTTTTCCAAAACCAATTGTATTTAGGTTGACACGAGTTGTTAAAGCACCTGAGTATGAGATTGGTGGTTGTGTTGTTTGCAGGCGACATGATTTCAGCGCTGCTAAATTTGATGATCGAACTGTACTGTTATGTGATCAATGTGAAAGAGAATTCCATGTGGGCTGTCTGCGGGATAGTGGATTATGTGATCTGCAGGAACTCCCCAAGGATAAGTGGTTCTGCTGTGATGAGTGCAGTAATATCCATGTGGTCCTTCAGAATACAGTTTTGAACGGGGCACAAATTATTCCAGATTCATTATCAGATTTAATAATCAGAAAGCACGTTGGAAAAGGATTATTTGTTGATGAAGCTCTTAATGATGTTCGGTGGCAAATTTTAAGTGGAAAAAGTCGCTACCCAGAAGATCTTCCATTTCTTTCAAGGGCAACTTCTATTTTTCGAGAATGTTTTGATCCTATTGTTGCAAAATCAGGTCGTGATCTGATACCCGTTATGGTTTATGGGAGAAATATATCTGGACAAGAGTTCGGAGGAATGTATTGTGTTGTTTTAATTGTGAGGTCTATAGTTGTATCGGCTGGTCTTCTTAGGATCTTTGGCCGTGAAGTTGCTGAGCTTCCTATTGTTGCCACAAGTAGAGAACATCAGGGCAAGGGTTACTTCCAAGTATTGTTTTCCTGTATAGAGCGACTACTTTCTTCCCTAAATGTGCAAAACCTTGTACTCCCTGCAGCCGAGGATGCTGAATCAATCTGGACCAATAAATTGGGTTTCAGAAAAATGAGTGAAGAACAATTGGCGAAGTATATGAGGGAGGTCCAGCTGACGATCTTCAATGGGACATCGATGCTAGAGAAGGTGGTGCAGCGGTCAACATGA 2556 43.31 MGEEAPGLVAVANKPLEKESASSTELKRDHQYLDEDTEPESFHNKKQAKEVSNEDVRSEVSNPVISPKGNHFQDITSQPDEQENTNQVERGDLTSACSGNSSSEDTSSDGVRCQNNTSRNEVDVCDDDEVSRVVIEIPKHASSTGIKKITFKFSKKKDNNDASRSADKVHSYGNSDKDCKPEPSSVDDAYTETSAHSWEGCAESSRFPPGPSKMELKMSKKVLPNNYPSNVKKLLSTGILDGARVKYISTTSEIKLDGIINGGGYMCGCSICNFTTILSAYEFEQHAGFKTRHPNNHIYLENGRPIYSVIQEIKSAPLSILDEVIKEVAGSSVNMDSFEAWQASFHKDSSGIEVENDNVKLPKLSHPIERLNPNLSNPVMQQKKSAEKGTKRRDNDLHRLLFMPNGLPDGAELAYFVKGQRILGGYKQGNGILCSHCNREISPSQFEAHAGMAARRQPYRHIYTTNGLTLHDIAISLASGQKLSSGDSDDMCAACGNGGDLIFCDRCPRAFHTXGGNIILFFPGCLHLQNVPEGVWCCPNCRDKVGSSLKAASGGPSSFPKPIVFRLTRVVKAPEYEIGGCVVCRRHDFSAAKFDDRTVLLCDQCEREFHVGCLRDSGLCDLQELPKDKWFCCDECSNIHVVLQNTVLNGAQIIPDSLSDLIIRKHVGKGLFVDEALNDVRWQILSGKSRYPEDLPFLSRATSIFRECFDPIVAKSGRDLIPVMVYGRNISGQEFGGMYCVVLIVRSIVVSAGLLRIFGREVAELPIVATSREHQGKGYFQVLFSCIERLLSSLNVQNLVLPAAEDAESIWTNKLGFRKMSEEQLAKYMREVQLTIFNGTSMLEKVVQRST 851
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 8575977 8583115 - Cp4.1LG08g11550.1 Cpe08g01153 474119

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g01153 851 MobiDBLite consensus disorder prediction 158 185 - -
Cpe08g01153 851 Pfam Tify domain binding domain 258 312 IPR032308 -
Cpe08g01153 851 Pfam Tify domain binding domain 425 474 IPR032308 -
Cpe08g01153 851 PANTHER AUTOIMMUNE REGULATOR 33 351 - -
Cpe08g01153 851 PANTHER AUTOIMMUNE REGULATOR 365 848 - -
Cpe08g01153 851 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 736 823 IPR016181 -
Cpe08g01153 851 MobiDBLite consensus disorder prediction 20 56 - -
Cpe08g01153 851 SMART PHD_3 580 637 IPR001965 -
Cpe08g01153 851 SMART PHD_3 491 542 IPR001965 -
Cpe08g01153 851 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 579 639 IPR013083 -
Cpe08g01153 851 SUPERFAMILY FYVE/PHD zinc finger 487 545 IPR011011 -
Cpe08g01153 851 MobiDBLite consensus disorder prediction 158 191 - -
Cpe08g01153 851 MobiDBLite consensus disorder prediction 372 393 - -
Cpe08g01153 851 ProSitePatterns Zinc finger PHD-type signature. 581 636 IPR019786 -
Cpe08g01153 851 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 33 351 - -
Cpe08g01153 851 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 365 848 - -
Cpe08g01153 851 SUPERFAMILY FYVE/PHD zinc finger 579 637 IPR011011 -
Cpe08g01153 851 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 480 560 IPR013083 -
Cpe08g01153 851 Gene3D - 683 847 - -
Cpe08g01153 851 ProSiteProfiles Zinc finger PHD-type profile. 578 639 IPR019787 -
Cpe08g01153 851 MobiDBLite consensus disorder prediction 1 123 - -
Cpe08g01153 851 MobiDBLite consensus disorder prediction 57 120 - -
Cpe08g01153 851 ProSiteProfiles Zinc finger PHD-type profile. 489 544 IPR019787 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g01153 - - - cmax:111481523 1530.38
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe03g00132 Cpe08g01153 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00901 Cpe-Chr5:5948305 Cpe08g01153 Cpe-Chr8:8575977 2.52E-41 dispersed
Cpe08g01153 Cpe-Chr8:8575977 Cpe09g00545 Cpe-Chr9:3661149 0 dispersed
Cpe01g01104 Cpe-Chr1:6521592 Cpe08g01153 Cpe-Chr8:8575977 2.27E-38 wgd
Cpe01g00193 Cpe-Chr1:1091374 Cpe08g01153 Cpe-Chr8:8575977 2.68E-42 wgd
Cpe03g00132 Cpe-Chr3:661351 Cpe08g01153 Cpe-Chr8:8575977 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g694 . . . . Bpe04g01561 . Bma04g01614 . Cmo06g00314 Cmo14g00154 . . . . . . Cpe08g01153 . . . . . . . . . . . . . . Cone3ag0322 . Cone13ag1327 Cone19ag1312 . . . Cme04g02602 . . Bda03g01749 Bda05g01208 . . . . Sed02g0695 . . Cma06g00312 . Car06g00270 Car14g00139 Cpe03g00132 . Bhi11g02231 Tan08g1981 Cmetu08g1975 . . . . Cla10g01990 Cam10g2058 Cec10g2099 Cco10g2081 Clacu10g2063 Cmu10g2811 Cre10g2204 Lsi03g02089 Csa03g03200 Chy04g02130 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe08g01153 CCT 18 847 PHD Transcription Factor Family AT3G53680 52.7 2.4e-247 852.4
Cpe03g00132 CCT 25 812 PHD Transcription Factor Family AT3G53680 51.6 2.1e-232 802.7
Cpe01g00193 CCT,ECH 483 609 PHD Transcription Factor Family AT3G53680 55.1 5.2e-37 153.7
Cpe16g00590 . 312 450 PHD Transcription Factor Family AT3G53680 51.8 5.2e-37 153.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005462 1 2 0 1 1 1 2 1 1 1 1 1 3 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe08g01153 Cpe_Chr08 FPKM 3.371069 3.756179 4.888329 4.662191 6.659121 7.898776 8.625914 6.65568 6.147242 7.612001