Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g01160 ATGAATTTTTCATCCATTCCTCCTTATCTTCATCCTTCTAATTGGCAACAGCAAGTTTCCCATCAACTTGGAACTACTACTACTACTACTACTACCTCTGCACCCACTTCTCAGCTTCCTCCTCCTCCTCCGCCCCCACCACCTCATGGCGGTTCCATCCGGCCCGGTTCCATGGCAGAGCGAGCTCGATTGGCTAATGTTCCCATGCCTGATGCTACATTGAAGTGCCCAAGATGTGAATCAACCAACACTAAGTTTTGTTACTTCAACAATTATAGCCTAACTCAGCCTCGCCACTTTTGCAAGACTTGCCGACGGTACTGGACGAGAGGTGGCGCTCTGAGGAACGTCCCGGTCGGGGGCGGTTGTCGGAGGAATAAAAGAAGTAAAGGGAGAAATTCTAAATCGCCGCCGGTTAGTTCTGACCGGCAACAACAAACTAGCGGTTCAGCTAATTCCTCATCAAGTGCAATAGCTTCCAATAATAATAGTGGACTTTCCCCACAGATCCCACCACACCGCTTCATGGCTCCTCTCCACCACCACCACCACCACCAACAACTCACTGACTTCGACATCGGAGGGTTCAACTACGGCGGCGGCGGTGTACTGTCAGCTCCTGCCACCGCCACCGGTGACCTGAGTTTCCAATTGGGTAACACTAATTTAGCTGGAGGAACAAGTATAGGATCTCTCTTGGGATTTGACCAACAATGGCGGCTCCAACAACAAGCTCCTCAATTTCCCTTCTTGTCGAGCCTCGACCCTTTCGACGGCGGTAGTAGCGGCGGCGGCGGCGGCGGCGATGGGTCGGGGTGGCAAATGAGGCCAAAATTACCCTCAGGATCAAGGAATTTAACCCAAATGGGAAATTCAGTGAAAATGGAAGGAACCCCAAATCATGAAGCTAACATTGGAAGGCAATTTGTTGGGAATGAACAATATTGGAGCGGTGGATCAATGGCGTGGTCGGATCTTTCTGGCTTCAGTTCTTCATCTTCAGCAAGAAACCCTTTATAG 1020 50.39 MNFSSIPPYLHPSNWQQQVSHQLGTTTTTTTTSAPTSQLPPPPPPPPPHGGSIRPGSMAERARLANVPMPDATLKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSKGRNSKSPPVSSDRQQQTSGSANSSSSAIASNNNSGLSPQIPPHRFMAPLHHHHHHQQLTDFDIGGFNYGGGGVLSAPATATGDLSFQLGNTNLAGGTSIGSLLGFDQQWRLQQQAPQFPFLSSLDPFDGGSSGGGGGGDGSGWQMRPKLPSGSRNLTQMGNSVKMEGTPNHEANIGRQFVGNEQYWSGGSMAWSDLSGFSSSSSARNPL 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 8615889 8617002 - Cp4.1LG08g11650.1 Cpe08g01160 474126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g01160 339 MobiDBLite consensus disorder prediction 1 56 - -
Cpe08g01160 339 MobiDBLite consensus disorder prediction 278 292 - -
Cpe08g01160 339 MobiDBLite consensus disorder prediction 1 35 - -
Cpe08g01160 339 MobiDBLite consensus disorder prediction 36 52 - -
Cpe08g01160 339 MobiDBLite consensus disorder prediction 133 169 - -
Cpe08g01160 339 MobiDBLite consensus disorder prediction 115 183 - -
Cpe08g01160 339 Pfam Dof domain, zinc finger 72 128 IPR003851 GO:0003677|GO:0006355
Cpe08g01160 339 ProSitePatterns Zinc finger Dof-type signature. 76 112 IPR003851 GO:0003677|GO:0006355
Cpe08g01160 339 PANTHER DOF ZINC FINGER PROTEIN DOF3.6 6 335 - -
Cpe08g01160 339 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 6 335 IPR045174 GO:0003700|GO:0006355
Cpe08g01160 339 MobiDBLite consensus disorder prediction 254 292 - -
Cpe08g01160 339 ProSiteProfiles Zinc finger Dof-type profile. 74 128 IPR003851 GO:0003677|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe03g00124 Cpe08g01160 CCT
Cpe03g00124 Cpe08g01160 ECH
Cpe08g01160 Cpe10g00881 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01240 Cpe-Chr2:11148513 Cpe08g01160 Cpe-Chr8:8615889 1.62E-53 dispersed
Cpe01g02293 Cpe-Chr1:19379956 Cpe08g01160 Cpe-Chr8:8615889 2.14E-47 wgd
Cpe01g01095 Cpe-Chr1:6475077 Cpe08g01160 Cpe-Chr8:8615889 9.32E-50 wgd
Cpe01g00186 Cpe-Chr1:1055284 Cpe08g01160 Cpe-Chr8:8615889 5.73E-46 wgd
Cpe10g00881 Cpe-Chr10:4961166 Cpe08g01160 Cpe-Chr8:8615889 3.59E-44 wgd
Cpe13g00850 Cpe-Chr13:7470504 Cpe08g01160 Cpe-Chr8:8615889 1.81E-48 wgd
Cpe19g00362 Cpe-Chr19:3293086 Cpe08g01160 Cpe-Chr8:8615889 2.86E-31 wgd
Cpe20g00813 Cpe-Chr20:7378828 Cpe08g01160 Cpe-Chr8:8615889 5.22E-50 wgd
Cpe03g00124 Cpe-Chr3:627920 Cpe08g01160 Cpe-Chr8:8615889 4.49E-132 wgd
Cpe05g00913 Cpe-Chr5:6006866 Cpe08g01160 Cpe-Chr8:8615889 1.64E-43 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49920 PF02701 zf-Dof 3.70E-32 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g01160 - - cpep:111791192 470.7