Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe08g01183 | ATGGCCGACGGCATTGAATCCTTCGACCATGTCCCTCAACAGAGCCGCCGTGATAAGCTCCGAGAACAGCCCGACCGCTCATCTTTCCTCCCTTTTTACGACCCCTCATTAATTTCCTCCTCCGACATCCTCTCCACCGCCGCCGCCGCCGCCGCCGCCGCCAACAATCCTCTTTTCCAATTCCACCACCCCTTCTTCGACACACAAATTCCCTCTTCCCTCTTACCCGATTCCAACAACTCTGTTCTCTTAAACCATTGCTACGCCGCCTTCAAGCCCGAACCCCTCTCTTTATCTCTCTCCTCTCACCCCTATCTGAGTACTGTTAATGTTCCTCTTGGACCTTTCACTGGGTACGCTTCCATTTTAAAAGGGTCGAGGTTTTTGAAGCCTGCTCAGCAGTTGTTGGAGGAGCTCTGTGATGTTGTTGGCCTTCAACGGACTCAATCCTCTTCGGCCACTTCCGGCAGTTTGAGTGACTGTGGAGTTGTTCATCATTCCCTTGCTTCTAACAAATCTACCCTTGTTTCCATGCTCGACGAGGTTTACCGAAAGTATAAGCAATACTATCTACAAATCGAGGAAGTGATGACATCGTTCGAGTACATCTCCGGGCTCGGGAATGCAGCGCCCTATGCCAACCAAGCTATAAAAGCCATGTACGCTTATTTCCAAAGCTTGAAAAATGCAATTCTTGACCAACTTAAATTCAATAAAAGGACTCATGGTGGTGACTACAGTCAAAGATCGGTTCGAAACCCGGGATTTCTTGACCATCAGCCTGTTTGGCGACCGCAACGAGGGCTACCCGAACAAGCAGTGACGGTTCTTCGTGGTTGGTTGTTCGATCATTTTTTGCATCCTTATCCTTCTGATACCGACAAGCTTATGTTGGCTAAACAGACTGGTCTGTCTCGTAGTCAGGTCTCTAACTGGTTCATTAATGCAAGAGTGAGGCTTTGGAAGCCAATGGTTGAAGAAATATACAATCTTGAAACAAAGCAGACACAGAAGAATTGCCATAGAGAAGAAGATCGAAACGAGCATCCTCCATCGCGAAACGAACCTCATGACATACCAATGGGGATTCAAGATGAGCCCTTTAACATATGTTACAACTTGTCAAGCCATTCCCATATGGCGAGCAACAACAACAACAGCGGAGTTTCCTTAACTCTTGGCCTTCACCAGAACAATGGCATTGGCGGCTTCCCTGTTGGAAACAGAGTGGAATGA | 1236 | 47.9 | MADGIESFDHVPQQSRRDKLREQPDRSSFLPFYDPSLISSSDILSTAAAAAAAANNPLFQFHHPFFDTQIPSSLLPDSNNSVLLNHCYAAFKPEPLSLSLSSHPYLSTVNVPLGPFTGYASILKGSRFLKPAQQLLEELCDVVGLQRTQSSSATSGSLSDCGVVHHSLASNKSTLVSMLDEVYRKYKQYYLQIEEVMTSFEYISGLGNAAPYANQAIKAMYAYFQSLKNAILDQLKFNKRTHGGDYSQRSVRNPGFLDHQPVWRPQRGLPEQAVTVLRGWLFDHFLHPYPSDTDKLMLAKQTGLSRSQVSNWFINARVRLWKPMVEEIYNLETKQTQKNCHREEDRNEHPPSRNEPHDIPMGIQDEPFNICYNLSSHSHMASNNNNSGVSLTLGLHQNNGIGGFPVGNRVE | 411 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 8741990 | 8744878 | - | Cp4.1LG08g11900.1 | Cpe08g01183 | 474149 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe08g01183 | 411 | MobiDBLite | consensus disorder prediction | 10 | 25 | - | - | |
| Cpe08g01183 | 411 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 93 | 400 | - | - | |
| Cpe08g01183 | 411 | SMART | prehox3 | 117 | 233 | IPR006563 | - | |
| Cpe08g01183 | 411 | SUPERFAMILY | Homeodomain-like | 265 | 330 | IPR009057 | - | |
| Cpe08g01183 | 411 | Pfam | Associated with HOX | 122 | 231 | IPR006563 | - | |
| Cpe08g01183 | 411 | ProSiteProfiles | 'Homeobox' domain profile. | 260 | 323 | IPR001356 | GO:0003677 | |
| Cpe08g01183 | 411 | PANTHER | BEL1-LIKE HOMEODOMAIN PROTEIN 9 | 93 | 400 | - | - | |
| Cpe08g01183 | 411 | CDD | homeodomain | 263 | 324 | IPR001356 | GO:0003677 | |
| Cpe08g01183 | 411 | MobiDBLite | consensus disorder prediction | 336 | 355 | - | - | |
| Cpe08g01183 | 411 | SMART | HOX_1 | 263 | 327 | IPR001356 | GO:0003677 | |
| Cpe08g01183 | 411 | MobiDBLite | consensus disorder prediction | 335 | 360 | - | - | |
| Cpe08g01183 | 411 | Gene3D | - | 266 | 328 | - | - | |
| Cpe08g01183 | 411 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
| Cpe08g01183 | 411 | Pfam | Homeobox KN domain | 280 | 319 | IPR008422 | GO:0003677|GO:0006355 |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cpe03g00089 | Cpe08g01183 | CCT | |
| Cpe03g00089 | Cpe08g01183 | ECH | |
| Cpe08g01183 | Cpe10g00915 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe08g01183 | Cpe-Chr8:8741990 | Cpe19g00315 | Cpe-Chr19:2732723 | 5.98E-81 | dispersed | |
| Cpe10g00915 | Cpe-Chr10:5106944 | Cpe08g01183 | Cpe-Chr8:8741990 | 1.85E-65 | wgd | |
| Cpe03g00089 | Cpe-Chr3:464228 | Cpe08g01183 | Cpe-Chr8:8741990 | 0 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 49923 | PF07526 | POX | 1.80E-26 | No_clan | Cpe | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe08g01183 | - | - | cmax:111470021 | 731.865 |